Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia

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Targeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia is …
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scholarly articleQ13442814

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P356DOI10.1101/GR.1119703
P932PMC publication ID403712
P698PubMed publication ID12819125
P5875ResearchGate publication ID10697557

P50authorYoshihide HayashizakiQ15055173
Piero CarninciQ15989751
Christine A WellsQ55091231
William J PavanQ55426393
Michelle L BrinkmeierQ58885270
Vassilis AidinisQ61313495
Atsushi YoshikiQ62939240
Junji HirotaQ62943046
Takao K HenschQ86811538
Paul A LyonsQ87690619
Stefano GustincichQ87810209
Peter MombaertsQ87837316
Yoshiyuki IshiiQ90899221
Yasushi OkazakiQ91404863
Shinji KondoQ92601651
Shiro FukudaQ97530390
Tomohiro KonoQ104746182
Naoki OsatoQ114419771
Michela FagioliniQ114432014
Rintaro SaitoQ116782210
Kazunori WakiQ116782213
Hideaki KonnoQ116782223
Akira WatahikiQ116782231
Katsunori AizawaQ116782234
Ayako YasunishiQ116782235
Kirk W. BeiselQ116782236
Masami MuramatsuQ116782237
Sally A. CamperQ40082925
Masayoshi ItohQ40343237
Takahiro ArakawaQ42930609
David A HumeQ49872722
Hidemasa U. BonoQ51632894
P2093author name stringAkira Nakagawara
Jun Kawai
Hiromitsu Nakauchi
Kazuhiro Shibata
Toshiyuki Shiraki
Mari Nakamura
Daisuke Sasaki
Moriaki Kusakabe
Noriko Kikuchi
Hiroo Iwata
Kenjiro Sato
William A Held
Yuichi Sugahara
Yuko Shibata
P2860cites workInitial sequencing and comparative analysis of the mouse genomeQ22122521
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequencesQ24336098
Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sitesQ24522529
Identification and characterization of the potential promoter regions of 1031 kinds of human genesQ24619773
Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genesQ24622458
Patterns of variant polyadenylation signal usage in human genesQ24624061
Stromal effects on mammary gland development and breast cancerQ24645558
Long-range heterogeneity at the 3' ends of human mRNAsQ24671919
A Drosophila full-length cDNA resourceQ24803485
A simple and very efficient method for generating cDNA librariesQ27860461
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAsQ28131821
The DNA sequence of human chromosome 22Q28139873
The DNA sequence of human chromosome 21Q28145358
Multiple tissue-specific promoters control expression of the murine tartrate-resistant acid phosphatase geneQ28198480
Large-scale transcriptional activity in chromosomes 21 and 22Q28216457
Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotidesQ28250451
Construction and characterization of a full length-enriched and a 5'-end-enriched cDNA libraryQ28254886
Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequenceQ28289843
Normalization and subtraction: two approaches to facilitate gene discoveryQ28294574
Generation and analysis of 280,000 human expressed sequence tagsQ28294585
High-efficiency full-length cDNA cloning by biotinylated CAP trapperQ28297857
Complementary DNA sequencing: expressed sequence tags and human genome projectQ29618255
Lambda ZAP: a bacteriophage lambda expression vector with in vivo excision propertiesQ29618268
Functional annotation of a full-length mouse cDNA collectionQ29618568
Computer-based methods for the mouse full-length cDNA encyclopedia: real-time sequence clustering for construction of a nonredundant cDNA library.Q30649625
Comparative evaluation of 5'-end-sequence quality of clones in CAP trapper and other full-length-cDNA librariesQ30655845
Cloning full-length, cap-trapper-selected cDNAs by using the single-strand linker ligation methodQ30678343
High-efficiency full-length cDNA cloningQ30704435
Balanced-size and long-size cloning of full-length, cap-trapped cDNAs into vectors of the novel lambda-FLC family allows enhanced gene discovery rate and functional analysisQ30711916
Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray dataQ30713065
Extra-long first-strand cDNA synthesisQ31058997
A Comparison of the Celera and Ensembl Predicted Gene Sets Reveals Little Overlap in Novel GenesQ56992806
How to count ... human genesQ73844431
Cytoplasmic RNA extraction from fresh and frozen mammalian tissuesQ74630934
A computer-based method of selecting clones for a full-length cDNA project: simultaneous collection of negligibly redundant and variant cDNAsQ31093457
An encyclopedia of mouse genesQ31905782
Removal of polyA tails from full-length cDNA libraries for high-efficiency sequencingQ32041882
Characterization of gene expression in mouse blastocyst using single-pass sequencing of 3995 clonesQ32063025
Continued discovery of transcriptional units expressed in cells of the mouse mononuclear phagocyte lineageQ33187493
Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptomeQ33679400
Analysis of expressed sequence tags indicates 35,000 human genesQ33903985
Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequenceQ33903990
The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome.Q33947020
Oligo(dT) primer generates a high frequency of truncated cDNAs through internal poly(A) priming during reverse transcriptionQ34028256
An anatomy of normal and malignant gene expressionQ34037920
A premature-termination mutation in the Mus musculus cyclin-dependent kinase 3 geneQ34098906
cDNA detection and analysisQ34134738
Delineating developmental and metabolic pathways in vivo by expression profiling using the RIKEN set of 18,816 full-length enriched mouse cDNA arraysQ34446005
RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencerQ35030550
Screening poly(dA/dT)- cDNAs for gene identificationQ35673112
Thermostabilization and thermoactivation of thermolabile enzymes by trehalose and its application for the synthesis of full length cDNA.Q35738957
High efficiency selection of full-length cDNA by improved biotinylated cap trapper.Q36864887
Comprehensive analysis of the mouse metabolome based on the transcriptomeQ38522738
The Mouse Gene Expression Database (GXD).Q38661540
Simple and rapid preparation of plasmid template by a filtration method using microtiter filter platesQ39719496
Increased specificity of reverse transcription priming by trehalose and oligo-blockers allows high-efficiency window separation of mRNA displayQ39727416
Automated filtration-based high-throughput plasmid preparation systemQ40413677
3'-end cleavage and polyadenylation of mRNA precursorsQ40503258
The mammalian protein-protein interaction database and its viewing system that is linked to the main FANTOM2 viewerQ40830052
Significance of rare m RNA sequences in liverQ41783524
Molecular analysis of gene expression in the developing pontocerebellar projection systemQ46888897
Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clusteringQ48038128
Verification and initial annotation of the NIA mouse 15K cDNA clone set.Q48367639
P433issue6B
P921main subjectencyclopediaQ5292
transcriptomeQ252857
P304page(s)1273-1289
P577publication date2003-06-01
P1433published inGenome ResearchQ5533485
P1476titleTargeting a complex transcriptome: the construction of the mouse full-length cDNA encyclopedia
P478volume13