Gen Htr : a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing

scientific article published on October 12, 2010

Gen Htr : a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/Yu10a
P356DOI10.1186/1471-2105-11-508
P953full work available at URLhttps://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-11-508
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20939910/?tool=EBI
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/20939910/pdf/?tool=EBI
http://www.biomedcentral.com/1471-2105/11/508
http://www.biomedcentral.com/1471-2105/11/508/abstract
http://www.biomedcentral.com/content/pdf/1471-2105-11-508.pdf
https://europepmc.org/articles/PMC2967562
https://europepmc.org/articles/PMC2967562?pdf=render
http://link.springer.com/article/10.1186/1471-2105-11-508/fulltext.html
http://link.springer.com/content/pdf/10.1186/1471-2105-11-508.pdf
P932PMC publication ID2967562
P698PubMed publication ID20939910
P5875ResearchGate publication ID47403260

P2093author name stringGongxin Yu
P2860cites workGeneWise and GenomewiseQ21061201
Comparative and evolutionary analysis of the bacterial homologous recombination systemsQ21092503
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequenceQ22122411
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
BLAT—The BLAST-Like Alignment ToolQ24682492
Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganismsQ24685491
Advanced sequencing technologies: methods and goalsQ28261786
Complete genome sequence of USA300, an epidemic clone of community-acquired meticillin-resistant Staphylococcus aureusQ28300379
Evidence that mycobacterial PE_PGRS proteins are cell surface constituents that influence interactions with other cellsQ28487378
The mismatch repair system (mutS, mutL and uvrD genes) in Pseudomonas aeruginosa: molecular characterization of naturally occurring mutantsQ28492576
A greedy algorithm for aligning DNA sequencesQ29547622
Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global disseminationQ29618475
Multilocus sequence typing for characterization of methicillin-resistant and methicillin-susceptible clones of Staphylococcus aureusQ29619365
Estimating recombinational parameters in Streptococcus pneumoniae from multilocus sequence typing data.Q30588690
Comparison of the proteome of Mycobacterium tuberculosis strain H37Rv with clinical isolate CDC 1551.Q30974038
Inference of bacterial microevolution using multilocus sequence dataQ31083111
Using quality scores and longer reads improves accuracy of Solexa read mappingQ33321695
Cell population heterogeneity in Mycobacterium tuberculosis H37Rv.Q50648160
The development of vancomycin resistance in a patient with methicillin-resistant Staphylococcus aureus infection.Q54105049
Highly Variable Mutation Rates in Commensal and Pathogenic Escherichia coliQ56944671
Fibronectin-binding proteins of Staphylococcus aureus mediate activation of human platelets via fibrinogen and fibronectin bridges to integrin GPIIb/IIIa and IgG binding to the FcgammaRIIa receptorQ58977886
Lack of Wall Teichoic Acids inStaphylococcus aureusLeads to Reduced Interactions with Endothelial Cells and to Attenuated Virulence in a Rabbit Model of EndocarditisQ60028864
Detecting recombination from gene treesQ74528770
Role of teichoic acids in Staphylococcus aureus nasal colonization, a major risk factor in nosocomial infectionsQ75394789
Teichoic acid is an essential polymer in Bacillus subtilis that is functionally distinct from teichuronic acidQ40421004
Emergence of phenotypic variants upon mismatch repair disruption in Pseudomonas aeruginosaQ40557981
Survey of methicillin-resistant Staphylococcus aureus strains from two hospitals in El Paso, TexasQ41880368
Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA.Q42287092
In vivo emergence of vicriviroc resistance in a human immunodeficiency virus type 1 subtype C-infected subjectQ42406917
Cloning and sequencing of the gene, fmtC, which affects oxacillin resistance in methicillin-resistant Staphylococcus aureusQ42659688
Role of mutS and mutL genes in hypermutability and recombination in Staphylococcus aureusQ42754912
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation linesQ42921561
Variability of Penicillin-Binding Proteins from Penicillin-Sensitive Streptococcus pneumoniaeQ44753724
Clumping factor A-mediated virulence during Staphylococcus aureus infection is retained despite fibrinogen depletionQ44784967
Hypermutable Haemophilus influenzae with mutations in mutS are found in cystic fibrosis sputumQ45044337
Heterogeneity of methicillin-resistant Staphylococcus aureus strains (MRSA) characterized by flow cytometryQ46069953
Antigenic Variation of Penicillin-Binding Proteins from Penicillin-Resistant Clinical Strains of Streptococcus pneumoniaeQ46504673
Differential roles of sortase-anchored surface proteins and wall teichoic acid in Staphylococcus aureus nasal colonizationQ46789843
Genetic polymorphism in Mycobacterium tuberculosis isolates from patients with chronic multidrug-resistant tuberculosisQ47348924
Clumping factor B (ClfB), a new surface-located fibrinogen-binding adhesin of Staphylococcus aureusQ48012907
High mutation frequencies among Escherichia coli and Salmonella pathogensQ48057867
Characterization of the highly abundant polymorphic GC-rich-repetitive sequence (PGRS) present in Mycobacterium tuberculosisQ48075296
Lack of mismatch correction facilitates genome evolution in mycobacteriaQ50097192
Detection of mutator subpopulations in Salmonella typhimurium LT2 by reversion of his allelesQ50130080
High-precision, whole-genome sequencing of laboratory strains facilitates genetic studiesQ33356613
Probabilistic base calling of Solexa sequencing dataQ33375519
Surface proteins that promote adherence of Staphylococcus aureus to human desquamated nasal epithelial cellsQ33404458
Population structure, antimicrobial resistance, and mutation frequencies of Streptococcus pneumoniae isolates from cystic fibrosis patients.Q33859051
The relative contributions of recombination and mutation to the divergence of clones of Neisseria meningitidisQ33879680
Mutation frequency and biological cost of antibiotic resistance in Helicobacter pyloriQ33952076
Genetic heterogeneity in Mycobacterium tuberculosis isolates reflected in IS6110 restriction fragment length polymorphism patterns as low-intensity bands.Q33970591
Mutator clones of Neisseria meningitidis in epidemic serogroup A diseaseQ34028018
Diversity of ribosomal mutations conferring resistance to macrolides, clindamycin, streptogramin, and telithromycin in Streptococcus pneumoniaeQ34104600
Clinical isolates of Staphylococcus aureus with ribosomal mutations conferring resistance to macrolidesQ34112287
Staphylococcal and streptococcal superantigens: molecular, biological and clinical aspectsQ34183536
Evidence for clonal evolution among highly polymorphic genes in methicillin-resistant Staphylococcus aureusQ34233268
Multi-locus sequence typing: a tool for global epidemiologyQ34269596
Evolution of high mutation rates in experimental populations of E. coliQ34429727
Immunization with Staphylococcus aureus clumping factor B, a major determinant in nasal carriage, reduces nasal colonization in a murine modelQ34492747
Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database managementQ34956480
Lateral gene transfer: when will adolescence end?Q35583479
Hetero-vancomycin-intermediate methicillin-resistant Staphylococcus aureus isolate from a medical center in Las Cruces, New MexicoQ35784289
A whole-genome microarray reveals genetic diversity among Helicobacter pylori strainsQ35852799
A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use caseQ35891640
Characterization of mutation spectra with ultra-deep pyrosequencing: application to HIV-1 drug resistanceQ35914785
Control of methionine synthesis and uptake by MetR and homocysteine in Streptococcus mutans.Q36098404
Transcriptional profiling reveals that daptomycin induces the Staphylococcus aureus cell wall stress stimulon and genes responsive to membrane depolarizationQ36482900
Multiple genome comparison within a bacterial species reveals a unit of evolution spanning two adjacent genes in a tandem paralog clusterQ36938929
The evolution of extensively drug resistant tuberculosis (XDR-TB): history, status and issues for global controlQ36985641
Genetic diversity and ecological success of Staphylococcus aureus strains colonizing humansQ37032905
Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemicQ37116927
Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescensQ37282936
The bacterial superantigen and superantigen-like proteinsQ37287814
Bacterial DNA topology and infectious disease.Q37346556
Hypermutation and the preexistence of antibiotic-resistant Pseudomonas aeruginosa mutants: implications for susceptibility testing and treatment of chronic infectionsQ37598703
Natural population dynamics and expansion of pathogenic clones of Staphylococcus aureusQ37700414
Nucleotide sequences of genes encoding penicillin-binding proteins from Streptococcus pneumoniae and Streptococcus oralis with high homology to Escherichia coli penicillin-binding proteins 1a and 1bQ38327719
A Vibrio cholerae LysR homolog, AphB, cooperates with AphA at the tcpPH promoter to activate expression of the ToxR virulence cascade.Q39496555
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjectbacterial genomeQ4839988
P304page(s)508
P577publication date2010-10-12
P1433published inBMC BioinformaticsQ4835939
P1476titleGenHtr: a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing
Gen Htr : a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequencing
P478volume11

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cites work (P2860)
Q35798971A Retrospective Study on Genetic Heterogeneity within Treponema Strains: Subpopulations Are Genetically Distinct in a Limited Number of Positions.
Q36559344Evolution in fast forward: a potential role for mutators in accelerating Staphylococcus aureus pathoadaptation

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