CircNet: a database of circular RNAs derived from transcriptome sequencing data

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CircNet: a database of circular RNAs derived from transcriptome sequencing data is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/LiuLSACLWHHCLH16
P356DOI10.1093/NAR/GKV940
P932PMC publication ID4702939
P698PubMed publication ID26450965
P5875ResearchGate publication ID282702776

P2093author name stringChao Cheng
Yu-Chen Liu
Chieh-Chen Huang
Chuan-Hu Sun
Chun-Chi Liu
Erik Andrews
Feng-Mao Lin
Hsien-Da Huang
Jian-Rong Li
Rou-Fang Chao
Sheng-Da Hsu
Shun-Long Weng
P2860cites workcircRNA biogenesis competes with pre-mRNA splicing.Q52779294
Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell typesQ21134799
Expanded identification and characterization of mammalian circular RNAsQ21146636
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Circular RNAs: relics of precellular evolution?Q24602170
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The sequence read archiveQ24616329
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiationQ24627354
miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNAQ24632605
Scrambled exonsQ28264741
High-throughput data integration of RNA-miRNA-circRNA reveals novel insights into mechanisms of benzo[a]pyrene-induced carcinogenicityQ28652466
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The evolution of gene expression levels in mammalian organsQ29617170
A double-negative feedback loop between ZEB1-SIP1 and the microRNA-200 family regulates epithelial-mesenchymal transitionQ29617690
Natural RNA circles function as efficient microRNA spongesQ29617892
Circular RNAs are a large class of animal RNAs with regulatory potencyQ29620042
ZEB1 sensitizes lung adenocarcinoma to metastasis suppression by PI3K antagonismQ33685931
Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structuresQ33891539
Detecting and characterizing circular RNAsQ34001743
Revisiting global gene expression analysisQ34308389
Circular RNAs are abundant, conserved, and associated with ALU repeatsQ34318374
circBase: a database for circular RNAs.Q34439445
Complementary sequence-mediated exon circularizationQ34439813
Characterization of RNase R-digested cellular RNA source that consists of lariat and circular RNAs from pre-mRNA splicing.Q34595403
Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulationQ34786685
Cell-type specific features of circular RNA expressionQ34988077
Correlation of circular RNA abundance with proliferation--exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissuesQ35015274
CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.Q35047609
The landscape of microRNA, Piwi-interacting RNA, and circular RNA in human salivaQ35096347
Circular RNA is expressed across the eukaryotic tree of lifeQ35114919
Neural circular RNAs are derived from synaptic genes and regulated by development and plasticity.Q35224640
Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal developmentQ35863369
Circular RNA is enriched and stable in exosomes: a promising biomarker for cancer diagnosisQ35925601
The mouse formin (Fmn) gene: abundant circular RNA transcripts and gene-targeted deletion analysis.Q36438235
Circular transcripts of the testis-determining gene Sry in adult mouse testisQ36695945
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Circular RNAs from transcripts of the rat cytochrome P450 2C24 gene: correlation with exon skippingQ37528872
The UCSC Genome Browser database: 2014 updateQ37661736
miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactionsQ37661923
Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.Q38881309
Next-generation sequencing identifies TGF-β1-associated gene expression profiles in renal epithelial cells reiterated in human diabetic nephropathyQ39408463
Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animalsQ41626571
Viroids: structure and function.Q41760306
Exon circularization in mammalian nuclear extracts.Q42012951
Exon Skipping Is Correlated with Exon CircularizationQ42776284
Circular RNAs are depleted of polymorphisms at microRNA binding sitesQ42958172
Identification of novel transcripts in annotated genomes using RNA-SeqQ46596669
P275copyright licenseCreative Commons Attribution-NonCommercial 4.0 InternationalQ34179348
P6216copyright statuscopyrightedQ50423863
P433issueD1
P407language of work or nameEnglishQ1860
P921main subjectdatabaseQ8513
transcriptomeQ252857
P304page(s)D209-15
P577publication date2015-10-07
P1433published inNucleic Acids ResearchQ135122
P1476titleCircNet: a database of circular RNAs derived from transcriptome sequencing data
P478volume44

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