| scholarly article | Q13442814 |
| P50 | author | Tomislav Domazet-Lošo | Q12643694 |
| Diethard Tautz | Q108624 | ||
| P2860 | cites work | A screen for fast evolving genes from Drosophila | Q36574265 |
| Fold recognition without folds | Q38269869 | ||
| The yeast genome project: what did we learn? | Q38562486 | ||
| Multi-query sequence BLAST output examination with MuSeqBox | Q42657929 | ||
| Ancient conserved regions in new gene sequences and the protein databases | Q47265342 | ||
| The Drosophila gene 2A5 complements the defect in mitochondrial F1-ATPase assembly in yeast lacking the molecular chaperone Atp11p | Q47952035 | ||
| A genetic deficiency that spans the flightin gene of Drosophila melanogaster affects the ultrastructure and function of the flight muscles | Q47986019 | ||
| Comparative evolutionary analysis of rDNA ITS regions in Drosophila | Q48083014 | ||
| Limits of homology detection by pairwise sequence comparison | Q48370372 | ||
| Bioinformatics and the discovery of gene function | Q71415909 | ||
| The Genome Sequence of the Malaria Mosquito Anopheles gambiae | Q22065828 | ||
| Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
| Automated finishing with autofinish | Q24621392 | ||
| The relationship of protein conservation and sequence length | Q24799730 | ||
| Basic local alignment search tool | Q25938991 | ||
| Base-calling of automated sequencer traces using phred. II. Error probabilities | Q27860615 | ||
| Base-calling of automated sequencer traces using phred. I. Accuracy assessment | Q27860665 | ||
| Consed: a graphical tool for sequence finishing | Q27860740 | ||
| The evolutionary fate and consequences of duplicate genes | Q27861065 | ||
| PAML: a program package for phylogenetic analysis by maximum likelihood | Q27861096 | ||
| InterProScan--an integration platform for the signature-recognition methods in InterPro | Q29547336 | ||
| Comparative genomics of the eukaryotes | Q29547504 | ||
| Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster | Q29614229 | ||
| An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region | Q30764357 | ||
| Evolutionary preservation of redundant duplicated genes | Q33794277 | ||
| Finding families for genomic ORFans | Q33875139 | ||
| On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? | Q34364840 | ||
| The complete DNA sequence of yeast chromosome III | Q34399284 | ||
| The correlation between synonymous and nonsynonymous substitutions in Drosophila: mutation, selection or relaxed constraints? | Q34605445 | ||
| Large number of replacement polymorphisms in rapidly evolving genes of Drosophila. Implications for genome-wide surveys of DNA polymorphism. | Q34608284 | ||
| Substitution rates in Drosophila nuclear genes: implications for translational selection | Q34611624 | ||
| The evolutionary analysis of "orphans" from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes | Q34613438 | ||
| From genes to individuals: developmental genes and the generation of the phenotype | Q35211969 | ||
| Flightin, a novel myofibrillar protein of Drosophila stretch-activated muscles | Q36232477 | ||
| Flightin is essential for thick filament assembly and sarcomere stability in Drosophila flight muscles | Q36293699 | ||
| P433 | issue | 10 | |
| P921 | main subject | Drosophila | Q312154 |
| P304 | page(s) | 2213-2219 | |
| P577 | publication date | 2003-10-01 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | An evolutionary analysis of orphan genes in Drosophila | |
| P478 | volume | 13 |
| Q34472529 | "Out of pollen" hypothesis for origin of new genes in flowering plants: study from Arabidopsis thaliana |
| Q30542008 | A comparative analysis of mitochondrial ORFans: new clues on their origin and role in species with doubly uniparental inheritance of mitochondria |
| Q42364655 | A database for orphan genes in Poaceae |
| Q33942615 | A microarray analysis of the rice transcriptome and its comparison to Arabidopsis |
| Q33385483 | A novel gene family controls species-specific morphological traits in Hydra |
| Q35844313 | A novel reductive dehalogenase, identified in a contaminated groundwater enrichment culture and in Desulfitobacterium dichloroeliminans strain DCA1, is linked to dehalogenation of 1,2-dichloroethane |
| Q28300661 | A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns |
| Q59698745 | Accelerated Evolutionary Rate May Be Responsible for the Emergence of Lineage-Specific Genes in Ascomycota |
| Q29029143 | An Ancient Evolutionary Origin of Genes Associated with Human Genetic Diseases |
| Q42005783 | An evolutionary analysis of flightin reveals a conserved motif unique and widespread in Pancrustacea |
| Q98891442 | An orphan protein of Fusarium graminearum modulates host immunity by mediating proteasomal degradation of TaSnRK1α |
| Q34671775 | Analysis of in planta Expressed Orphan Genes in the Rice Blast Fungus Magnaporthe oryzae |
| Q40901286 | Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli |
| Q93077295 | Bioinformatic analysis suggests potential mechanisms underlying parasitoid venom evolution and function |
| Q35702375 | Causes and consequences of genome expansion in fungi |
| Q35556922 | Chromosomal localization of microsatellite loci in Drosophila mediopunctata |
| Q33530936 | Comparative analyses reveal distinct sets of lineage-specific genes within Arabidopsis thaliana |
| Q38819225 | Comparative genomic analysis of SET domain family reveals the origin, expansion, and putative function of the arthropod-specific SmydA genes as histone modifiers in insects |
| Q36335799 | Comparative transcriptomics of Entelegyne spiders (Araneae, Entelegynae), with emphasis on molecular evolution of orphan genes |
| Q26738988 | Computational Identification of Novel Genes: Current and Future Perspectives |
| Q28754878 | Consistent and contrasting properties of lineage-specific genes in the apicomplexan parasites Plasmodium and Theileria |
| Q30774412 | Correlated evolution of synonymous and nonsynonymous sites in Drosophila |
| Q43989333 | Correlation between Ka/Ks and Ks is related to substitution model and evolutionary lineage. |
| Q34588954 | Cross-species comparison of Drosophila male accessory gland protein genes |
| Q24796663 | Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila |
| Q86320144 | De novo gene birth |
| Q34212552 | Differential responses to Wnt and PCP disruption predict expression and developmental function of conserved and novel genes in a cnidarian. |
| Q33284075 | Discovery and characterization of 91 novel transcripts expressed in cattle placenta |
| Q33605392 | Does the core circadian clock in the moss Physcomitrella patens (Bryophyta) comprise a single loop? |
| Q34593165 | Emergence of novel domains in proteins |
| Q27310666 | Emergence, Retention and Selection: A Trilogy of Origination for Functional De Novo Proteins from Ancestral LncRNAs in Primates |
| Q64119175 | Evolution and Diversification of Genes in Solanaceae |
| Q38085957 | Evolution and function of de novo originated genes |
| Q90198387 | Evolution of new proteins from translated sORFs in long non-coding RNAs |
| Q37578908 | Evolution of protein N-glycosylation process in Golgi apparatus which shapes diversity of protein N-glycan structures in plants, animals and fungi |
| Q48338961 | Evolution within the fungal genus Verticillium is characterized by chromosomal rearrangement and gene loss. |
| Q31096256 | Evolutionary insights into scleractinian corals using comparative genomic hybridizations |
| Q33824124 | Evolutionary origins of Brassicaceae specific genes in Arabidopsis thaliana. |
| Q37318397 | Evolutionary transients in the rice transcriptome |
| Q36271123 | Fact or fiction: updates on how protein-coding genes might emerge de novo from previously non-coding DNA. |
| Q38501925 | Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. |
| Q21145221 | Gene family evolution across 12 Drosophila genomes |
| Q50487093 | Gene family evolution in green plants with emphasis on the origination and evolution of Arabidopsis thaliana genes |
| Q28650491 | Genes associated with ant social behavior show distinct transcriptional and evolutionary patterns |
| Q111629625 | Genetic innovations: Transposable element recruitment and de novo formation lead to the birth of orphan genes in the rice genome |
| Q36775971 | Genome-Wide Analysis Indicates Lineage-Specific Gene Loss during Papilionoideae Evolution |
| Q25255543 | Genome-wide acceleration of protein evolution in flies (Diptera). |
| Q38516000 | Genome-wide analysis of intronless genes in rice and Arabidopsis |
| Q35696128 | Genome-wide identification of lineage-specific genes within Caenorhabditis elegans |
| Q28703527 | Genome-wide identification, characterization, and expression analysis of lineage-specific genes within zebrafish |
| Q35467878 | Genome-wide survey of natural selection on functional, structural, and network properties of polymorphic sites in Saccharomyces paradoxus |
| Q33219930 | Genomic tools and cDNA derived markers for butterflies |
| Q35047581 | Genomics of ecological adaptation in cactophilic Drosophila. |
| Q34898312 | Heterochromatic genes in Drosophila: a comparative analysis of two genes |
| Q28607274 | How Do Genomes Create Novel Phenotypes? Insights from the Loss of the Worker Caste in Ant Social Parasites |
| Q36159552 | How microbiology helps define the rhizome of life |
| Q28756134 | Identification and characterization of lineage-specific genes within the Poaceae |
| Q40619178 | Identification and evolution of the orphan genes in the domestic silkworm, Bombyx mori |
| Q35849107 | Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis) |
| Q97526153 | Improved reconstruction and comparative analysis of chromosome 12 to rectify Mis-assemblies in Gossypium arboreum |
| Q57685595 | Incipient de novo genes can evolve from frozen accidents that escaped rapid transcript turnover |
| Q34573268 | Intron size and exon evolution in Drosophila |
| Q42775735 | Large-scale coding sequence change underlies the evolution of postdevelopmental novelty in honey bees. |
| Q48789487 | Lineage-specific expansion of the zinc finger associated domain ZAD. |
| Q28284117 | Mechanisms and dynamics of orphan gene emergence in insect genomes |
| Q94076976 | Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa |
| Q36247081 | Mobile genetic elements: the agents of open source evolution |
| Q39296816 | Molecular adaptation and resilience of the insect's nuclear receptor USP |
| Q41369501 | New Genes and Functional Innovation in Mammals |
| Q33590820 | No Evidence for Phylostratigraphic Bias Impacting Inferences on Patterns of Gene Emergence and Evolution |
| Q89070218 | No beneficial fitness effects of random peptides |
| Q29013881 | On homology searches by protein Blast and the characterization of the age of genes |
| Q33254239 | On the origin of microbial ORFans: quantifying the strength of the evidence for viral lateral transfer |
| Q24812657 | Open reading frames provide a rich pool of potential natural antisense transcripts in fungal genomes |
| Q33942603 | Origin and evolution of new exons in rodents |
| Q28303276 | Origin of primate orphan genes: a comparative genomics approach |
| Q40610377 | Origins and Evolution of tetherin, an Orphan Antiviral Gene. |
| Q35882542 | Origins of De Novo Genes in Human and Chimpanzee |
| Q33247622 | PHOG: a database of supergenomes built from proteome complements |
| Q34573540 | Patterns of synonymous codon usage in Drosophila melanogaster genes with sex-biased expression |
| Q34329311 | Phylogenetic patterns of emergence of new genes support a model of frequent de novo evolution |
| Q29391905 | Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution |
| Q64116423 | Phylostratigraphic analysis of gene co-expression network reveals the evolution of functional modules for ovarian cancer |
| Q28652126 | Phylostratigraphic profiles in zebrafish uncover chordate origins of the vertebrate brain |
| Q21245316 | Phylostratigraphic tracking of cancer genes suggests a link to the emergence of multicellularity in metazoa |
| Q36447154 | Population diversity of ORFan genes in Escherichia coli |
| Q36543218 | Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation |
| Q46503349 | Protein evolution in the context of Drosophila development |
| Q34421535 | Protein flexibility facilitates quaternary structure assembly and evolution |
| Q34068075 | Pyrosequencing data reveals tissue-specific expression of lineage-specific transcripts in chickpea |
| Q33919811 | Rapid evolution of coral proteins responsible for interaction with the environment |
| Q34382690 | Relaxed purifying selection and possibly high rate of adaptation in primate lineage-specific genes |
| Q41334509 | Revisiting the Saccharomyces cerevisiae predicted ORFeome |
| Q33290001 | Sampling Daphnia's expressed genes: preservation, expansion and invention of crustacean genes with reference to insect genomes |
| Q36409867 | Significant comparative characteristics between orphan and nonorphan genes in the rice (Oryza sativa L.) genome |
| Q33633483 | Similarly strong purifying selection acts on human disease genes of all evolutionary ages |
| Q38303507 | Single mage gene in the chicken genome encodes CMage, a protein with functional similarities to mammalian type II Mage proteins. |
| Q35948471 | Spermatogenesis Drives Rapid Gene Creation and Masculinization of the X Chromosome in Stalk-Eyed Flies (Diopsidae). |
| Q27677472 | Structural View of a Non Pfam Singleton and Crystal Packing Analysis |
| Q27662573 | Structural and Functional Study of Yer067w, a New Protein Involved in Yeast Metabolism Control and Drug Resistance |
| Q34458709 | Structural features and the persistence of acquired proteins |
| Q36000695 | Structure and age jointly influence rates of protein evolution |
| Q89746610 | Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes |
| Q34774373 | Taxonomically restricted genes are associated with the evolution of sociality in the honey bee. |
| Q21146376 | The Genomes of Oryza sativa: a history of duplications |
| Q36254755 | The Goddard and Saturn Genes Are Essential for Drosophila Male Fertility and May Have Arisen De Novo |
| Q22122002 | The evolutionary origin of orphan genes |
| Q34392525 | The influence of rickettsiologists on post-modern microbiology |
| Q21128779 | The life cycle of Drosophila orphan genes |
| Q33517995 | The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species |
| Q34000810 | The roles and evolutionary patterns of intronless genes in deuterostomes |
| Q90637083 | Toward Reducing Phylostratigraphic Errors and Biases |
| Q33660421 | Transcriptome analysis of the whitefly, Bemisia tabaci MEAM1 during feeding on tomato infected with the crinivirus, Tomato chlorosis virus, identifies a temporal shift in gene expression and differential regulation of novel orphan genes |
| Q35207816 | Uncovering adaptive evolution in the human lineage. |
| Q28709351 | Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma americanum |
| Q24676007 | Widespread adaptive evolution of Drosophila genes with sex-biased expression |
| Q34239196 | Young proteins experience more variable selection pressures than old proteins |
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