Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy

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Metagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1003905845
P356DOI10.1186/S13068-016-0441-1
P932PMC publication ID4736482
P698PubMed publication ID26839589
P5875ResearchGate publication ID292616740

P50authorPanagiotis G. KougiasQ55835136
Giorgio ValleQ56477247
Stefano CampanaroQ56573665
Irini AngelidakiQ41804134
Laura TreuQ42775940
P2093author name stringDavide De Francisci
P2860cites workThe metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomesQ21284200
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Fast gapped-read alignment with Bowtie 2Q27860699
Eubacteria and archaea communities in seven mesophile anaerobic digester plants in GermanyQ28648162
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Characterization of a biogas-producing microbial community by short-read next generation DNA sequencingQ28727221
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Metagenomics: read length mattersQ33314518
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Diversity of the resident microbiota in a thermophilic municipal biogas plantQ33372368
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Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencingQ33456308
Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage.Q33855199
Elucidation of methanogenic coenzyme biosyntheses: from spectroscopy to genomicsQ33959164
Interactive metagenomic visualization in a Web browserQ34036161
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineageQ34101446
Untangling genomes from metagenomes: revealing an uncultured class of marine EuryarchaeotaQ34149345
High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendmentQ34203146
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Effect of ammonium and acetate on methanogenic pathway and methanogenic community compositionQ34342733
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomesQ34346732
A metagenomic study of the microbial communities in four parallel biogas reactorsQ34355223
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbesQ34363801
Products of Anaerobic 2,4,6-Trinitrotoluene (TNT) Transformation by Clostridium bifermentansQ34423909
Complete genome sequence of Thermanaerovibrio acidaminovorans type strain (Su883).Q34558660
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseasesQ35075729
New steady-state microbial community compositions and process performances in biogas reactors induced by temperature disturbancesQ35109952
Tackling soil diversity with the assembly of large, complex metagenomesQ35121676
Towards molecular biomarkers for biogas production from lignocellulose-rich substratesQ35160706
Binning metagenomic contigs by coverage and compositionQ35251310
Expanded microbial genome coverage and improved protein family annotation in the COG databaseQ35254493
Microbial diversity and dynamicity of biogas reactors due to radical changes of feedstock compositionQ35475189
New mode of energy metabolism in the seventh order of methanogens as revealed by comparative genome analysis of “Candidatus methanoplasma termitum”.Q35514553
Energy Conservation in Acetogenic BacteriaQ35577559
Functionally redundant but dissimilar microbial communities within biogas reactors treating maize silage in co-fermentation with sugar beet silageQ35705670
Biogas Upgrading via Hydrogenotrophic Methanogenesis in Two-Stage Continuous Stirred Tank Reactors at Mesophilic and Thermophilic ConditionsQ35781907
Microbial community dynamics in replicate anaerobic digesters exposed sequentially to increasing organic loading rate, acidosis, and process recovery.Q35965046
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communitiesQ36015586
Bacterial phosphotransferase system (PTS) in carbohydrate uptake and control of carbon metabolism.Q36289795
Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganismsQ36803555
The future of anaerobic digestion and biogas utilization.Q37393372
Ecophysiology of syntrophic communities that degrade saturated and unsaturated long-chain fatty acidsQ37505221
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).Q37661996
Gene and translation initiation site prediction in metagenomic sequencesQ39585994
Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencingQ39651404
Effect of medium composition and sludge removal on the production, composition, and architecture of thermophilic (55 degrees C) acetate-utilizing granules from an upflow anaerobic sludge blanket reactorQ39858354
Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plantQ40674458
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomesQ40936712
Complete genome sequence of the strain Defluviitoga tunisiensis L3, isolated from a thermophilic, production-scale biogas plantQ41174425
Acetate oxidation is the dominant methanogenic pathway from acetate in the absence of MethanosaetaceaeQ41486476
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomesQ42207944
Taxonomic metagenome sequence assignment with structured output modelsQ42790557
Complete genome sequence of the cellulolytic thermophile Ruminoclostridium cellulosi wild-type strain DG5 isolated from a thermophilic biogas plantQ43022720
Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing.Q43033645
A balanced microbiota efficiently produces methane in a novel high-rate horizontal anaerobic reactor for the treatment of swine wastewaterQ43338128
Performance and microbial community analysis of the anaerobic reactor with coke oven gas biomethanation and in situ biogas upgradingQ43362445
The IWA Anaerobic Digestion Model No 1 (ADM1).Q44109615
Anaerobic transformation of 2,4,6-TNT by bovine ruminal microbesQ44747998
The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technologyQ46504660
P921main subjectbiogasQ171076
metagenomicsQ903778
microbiomeQ1330402
P304page(s)26
P577publication date2016-02-02
P1433published inBiotechnology for BiofuelsQ15754394
P1476titleMetagenomic analysis and functional characterization of the biogas microbiome using high throughput shotgun sequencing and a novel binning strategy
P478volume9

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cites work (P2860)
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