A selection index for gene expression evolution and its application to the divergence between humans and chimpanzees

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A selection index for gene expression evolution and its application to the divergence between humans and chimpanzees is …
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P819ADS bibcode2012PLoSO...734935W
P356DOI10.1371/JOURNAL.PONE.0034935
P932PMC publication ID3329554
P698PubMed publication ID22529958
P5875ResearchGate publication ID224822101

P50authorAdam Eyre-WalkerQ30001938
P2093author name stringMaria Warnefors
P2860cites workInitial sequencing and analysis of the human genomeQ21045365
Gene regulation in primates evolves under tissue-specific selection pressuresQ21145029
Genetic structure of chimpanzee populationsQ21145232
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Exploration, normalization, and summaries of high density oligonucleotide array probe level dataQ27861098
Evolution at two levels in humans and chimpanzeesQ28141105
Gene Regulation for Higher Cells: A TheoryQ28256064
The evolutionary significance of cis-regulatory mutationsQ28288545
Expression profiling in primates reveals a rapid evolution of human transcription factorsQ28300964
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Evolution of gene expression in the Drosophila melanogaster subgroup.Q52023786
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Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.Q52562986
A mutation accumulation assay reveals a broad capacity for rapid evolution of gene expression.Q52662349
Quantifying the Slightly Deleterious Mutation Model of Molecular EvolutionQ57675399
DNA evolution under weak selectionQ73408540
Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription controlQ79984606
The transcriptional consequences of mutation and natural selection in Caenorhabditis elegansQ81685760
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Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.Q30363389
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Adaptive gene expression divergence inferred from population genomicsQ33304224
Human and chimpanzee gene expression differences replicated in mice fed different dietsQ33317273
Assessing the evolutionary impact of amino acid mutations in the human genomeQ33339383
Selective constraints in experimentally defined primate regulatory regions.Q33360259
Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergenceQ33491547
Sex-specific and lineage-specific alternative splicing in primatesQ33618915
Both noncoding and protein-coding RNAs contribute to gene expression evolution in the primate brainQ33730924
Systematic detection of polygenic cis-regulatory evolutionQ33869502
The divergence of chimpanzee species and subspecies as revealed in multipopulation isolation-with-migration analysesQ33881190
The number of heterozygous nucleotide sites maintained in a finite population due to steady flux of mutationsQ33985776
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Neutral and adaptive variation in gene expressionQ34481698
Demographic history and genetic differentiation in apesQ34534579
Positive and negative selection on the human genomeQ34612936
Adaptive evolution in humans revealed by the negative correlation between the polymorphism and fixation phases of evolutionQ35676702
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Evolution of primate gene expressionQ36572075
Optimization of gene expression by natural selectionQ37078978
Gene expression levels are a target of recent natural selection in the human genomeQ37398950
A problem with the correlation coefficient as a measure of gene expression divergenceQ37454684
The effects of EBV transformation on gene expression levels and methylation profilesQ39598932
Toward a neutral evolutionary model of gene expressionQ41989930
Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size changeQ42624915
Common pattern of evolution of gene expression level and protein sequence in DrosophilaQ46227308
Adaptive evolution of non-coding DNA in DrosophilaQ46601551
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)e34935
P577publication date2012-04-18
P1433published inPLOS OneQ564954
P1476titleA selection index for gene expression evolution and its application to the divergence between humans and chimpanzees
P478volume7

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cites work (P2860)
Q92739479A comparison of gene expression and DNA methylation patterns across tissues and species
Q92993220Drift and Directional Selection Are the Evolutionary Forces Driving Gene Expression Divergence in Eye and Brain Tissue of Heliconius Butterflies
Q38258263Evolutionary dynamics of coding and non-coding transcriptomes
Q41030787Gene Expression Evolves under a House-of-Cards Model of Stabilizing Selection.
Q37428447Modeling gene expression evolution with an extended Ornstein-Uhlenbeck process accounting for within-species variation
Q34107439Neutral and adaptive explanations for an association between caste-biased gene expression and rate of sequence evolution.
Q33895021Pleiotropic mutations are subject to strong stabilizing selection
Q30993138Widespread and Adaptive Alterations in Genome-Wide Gene Expression Associated with Ecological Divergence of Two Oryza Species