XML schemas for common bioinformatic data types and their application in workflow systems

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XML schemas for common bioinformatic data types and their application in workflow systems is …
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scholarly articleQ13442814
review articleQ7318358

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P8978DBLP publication IDjournals/bmcbi/SeibelKHSLMDG06
P356DOI10.1186/1471-2105-7-490
P2888exact matchhttps://scigraph.springernature.com/pub.10.1186/1471-2105-7-490
P932PMC publication ID2001303
P698PubMed publication ID17087823
P5875ResearchGate publication ID6708956

P50authorRobert GiegerichQ102176686
Thomas DandekarQ21127379
P2093author name stringHenning Mersch
Jan Krüger
Philipp N Seibel
Knut Schwarzer
Sven Hartmeier
Kai Löwenthal
P2860cites workBioMOBY: an open source biological web services proposalQ38453285
Biosphere: the interoperation of web services in microarray cluster analysis.Q38520957
GenDB--an open source genome annotation system for prokaryote genomesQ39747829
DIALIGN: multiple DNA and protein sequence alignment at BiBiServQ41010601
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequencesQ41011216
The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analysesQ41816201
Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structuresQ41987599
Soap-HT-BLAST: high throughput BLAST based on Web servicesQ43788616
Multiple sequence alignment with the Divide-and-Conquer methodQ47820207
RNAshapes: an integrated RNA analysis package based on abstract shapes.Q51958112
Using the FASTA Program to Search Protein and DNA Sequence DatabasesQ54987805
Creating a bioinformatics nationQ74053939
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamicsQ21284292
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
The PEDANT genome database in 2005Q24793326
Pegasys: software for executing and integrating analyses of biological sequencesQ24797621
Design and implementation of microarray gene expression markup language (MAGE-ML)Q24803717
Wildfire: distributed, Grid-enabled workflow construction and executionQ24811570
Eclair--a web service for unravelling species origin of sequences sampled from mixed host interfacesQ24812828
SOAP-based services provided by the European Bioinformatics InstituteQ24813441
Database resources of the National Center for Biotechnology InformationQ25254988
MIPS: analysis and annotation of proteins from whole genomes in 2005.Q25257078
Prediction of complete gene structures in human genomic DNAQ27860780
The Bio* toolkits--a brief overviewQ28201729
Secondary structure prediction for aligned RNA sequencesQ28206303
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network modelsQ28212902
Taverna: a tool for the composition and enactment of bioinformatics workflowsQ28267254
REPuter: the manifold applications of repeat analysis on a genomic scaleQ29617500
The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction dataQ29618643
RNAML: a standard syntax for exchanging RNA information.Q30330518
Biological SOAP servers and web services provided by the public sequence data bankQ30806513
PDBML: the representation of archival macromolecular structure data in XML.Q30973739
Designing and executing scientific workflows with a programmable integrator.Q33200787
Computer prediction of RNA structureQ34040945
A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the EukaryotaQ34366269
Local similarity in RNA secondary structures.Q34490679
INCLUSive: A web portal and service registry for microarray and regulatory sequence analysisQ35208563
AliasServer: a web server to handle multiple aliases used to refer to proteinsQ38422873
ProML--the protein markup language for specification of protein sequences, structures and families.Q38453146
P407language of work or nameEnglishQ1860
P921main subjectExtensible Markup LanguageQ2115
bioinformaticsQ128570
workflowQ627335
P304page(s)490
P577publication date2006-11-06
P1433published inBMC BioinformaticsQ4835939
P1476titleXML schemas for common bioinformatic data types and their application in workflow systems
P478volume7

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cites work (P2860)
Q246718784SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing
Q33686656BioXSD: the common data-exchange format for everyday bioinformatics web services
Q30987801Experiences with workflows for automating data-intensive bioinformatics
Q33331984GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
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Q34530068Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package.
Q24684430RNA Movies 2: sequential animation of RNA secondary structures
Q46264375Systematically linking tranSMART, Galaxy and EGA for reusing human translational research data.
Q28755348Techniques for integrating -omics data
Q27134746Towards interoperable and reproducible QSAR analyses: Exchange of datasets
Q28750523Trends in modeling Biomedical Complex Systems

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