| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/bioinformatics/VenkatramanO07 |
| P356 | DOI | 10.1093/BIOINFORMATICS/BTL646 |
| P698 | PubMed publication ID | 17234643 |
| P5875 | ResearchGate publication ID | 6567461 |
| P2093 | author name string | Adam B Olshen | |
| E S Venkatraman | |||
| P2860 | cites work | Bioconductor: open software development for computational biology and bioinformatics | Q21194861 |
| P433 | issue | 6 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 657-663 | |
| P577 | publication date | 2007-01-18 | |
| P1433 | published in | Bioinformatics | Q4914910 |
| P1476 | title | A faster circular binary segmentation algorithm for the analysis of array CGH data | |
| P478 | volume | 23 |
| Q38860040 | A Direct Test of Selection in Cell Populations Using the Diversity in Gene Expression within Tumors |
| Q39515956 | A HIERARCHICAL BAYESIAN MODEL FOR INFERENCE OF COPY NUMBER VARIANTS AND THEIR ASSOCIATION TO GENE EXPRESSION. |
| Q35900958 | A Single-Array-Based Method for Detecting Copy Number Variants Using Affymetrix High Density SNP Arrays and its Application to Breast Cancer |
| Q38377260 | A bayesian analysis for identifying DNA copy number variations using a compound poisson process |
| Q38471824 | A bayesian integrative model for genetical genomics with spatially informed variable selection. |
| Q33594892 | A classification model for distinguishing copy number variants from cancer-related alterations |
| Q30371323 | A community effort to assess and improve drug sensitivity prediction algorithms. |
| Q38707682 | A comparative genomic hybridization approach to study gene copy number variations among chinese hamster cell lines. |
| Q38407293 | A computational index derived from whole-genome copy number analysis is a novel tool for prognosis in early stage lung squamous cell carcinoma |
| Q37318482 | A computational procedure to identify significant overlap of differentially expressed and genomic imbalanced regions in cancer datasets |
| Q40412528 | A definitive haplotype map of structural variations determined by microarray analysis of duplicated haploid genomes |
| Q37184002 | A der(8)t(8;11) chromosome in the Karpas-620 myeloma cell line expresses only cyclin D1: yet both cyclin D1 and MYC are repositioned in close proximity to the 3'IGH enhancer |
| Q36451331 | A discovery resource of rare copy number variations in individuals with autism spectrum disorder |
| Q41580768 | A distinctive oral phenotype points to FAM20A mutations not identified by Sanger sequencing |
| Q33903385 | A fast and accurate method to detect allelic genomic imbalances underlying mosaic rearrangements using SNP array data |
| Q33403709 | A flexible rank-based framework for detecting copy number aberrations from array data |
| Q33923176 | A fused lasso latent feature model for analyzing multi-sample aCGH data |
| Q30000981 | A genome-wide analysis of array-based comparative genomic hybridization (CGH) data to detect intra-species variations and evolutionary relationships |
| Q31151570 | A genome-wide study of de novo deletions identifies a candidate locus for non-syndromic isolated cleft lip/palate risk |
| Q34345591 | A global view of the oncogenic landscape in nasopharyngeal carcinoma: an integrated analysis at the genetic and expression levels |
| Q30570534 | A high-throughput computational framework for identifying significant copy number aberrations from array comparative genomic hybridisation data |
| Q83816634 | A method for detecting significant genomic regions associated with oral squamous cell carcinoma using aCGH |
| Q34045211 | A model-based circular binary segmentation algorithm for the analysis of array CGH data |
| Q37396260 | A new chromosome x exon-specific microarray platform for screening of patients with X-linked disorders |
| Q33892998 | A new highly penetrant form of obesity due to deletions on chromosome 16p11.2. |
| Q33804466 | A novel SNP analysis method to detect copy number alterations with an unbiased reference signal directly from tumor samples |
| Q28943309 | A pilot genome-wide association study shows genomic variants enriched in the non-tumor cells of patients with well-differentiated neuroendocrine tumors of the ileum |
| Q31161667 | A probe-density-based analysis method for array CGH data: simulation, normalization and centralization. |
| Q34369388 | A recurrent germline PAX5 mutation confers susceptibility to pre-B cell acute lymphoblastic leukemia |
| Q37140342 | A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods |
| Q24600510 | A small-cell lung cancer genome with complex signatures of tobacco exposure |
| Q33513807 | A statistical change point model approach for the detection of DNA copy number variations in array CGH data |
| Q37789527 | A survey of analysis software for array-comparative genomic hybridisation studies to detect copy number variation |
| Q37019200 | A survey of intragenic breakpoints in glioblastoma identifies a distinct subset associated with poor survival |
| Q37158337 | A whole-genome massively parallel sequencing analysis of BRCA1 mutant oestrogen receptor-negative and -positive breast cancers |
| Q30758172 | ADaCGH2: parallelized analysis of (big) CNA data. |
| Q42277885 | ALLELE-SPECIFIC COPY NUMBER ESTIMATION BY WHOLE EXOME SEQUENCING. |
| Q39064369 | Aberrant expression of plastin-3 via copy number gain induces the epithelial-mesenchymal transition in circulating colorectal cancer cells |
| Q36041731 | Acquirement of DNA copy number variations in non-small cell lung cancer metastasis to the brain |
| Q90351147 | Acute lymphoblastic leukemia as a clonally unrelated second primary malignancy after multiple myeloma |
| Q39868878 | Acute sensitivity of the oral mucosa to oncogenic K-ras. |
| Q38089627 | Advances in biotechnology and informatics to link variation in the genome to phenotypes in plants and animals |
| Q30014827 | Advances in understanding cancer genomes through second-generation sequencing |
| Q39453584 | Allele-specific copy number analysis of tumor samples with aneuploidy and tumor heterogeneity |
| Q41725200 | Allele-specific copy number profiling by next-generation DNA sequencing |
| Q34899256 | Amplification of the ch19p13.2 NACC1 locus in ovarian high-grade serous carcinoma |
| Q28728499 | Amplified loci on chromosomes 8 and 17 predict early relapse in ER-positive breast cancers |
| Q41232766 | An ANOCEF genomic and transcriptomic microarray study of the response to irinotecan and bevacizumab in recurrent glioblastomas |
| Q35805987 | An Integrative Analysis to Identify Driver Genes in Esophageal Squamous Cell Carcinoma |
| Q35120784 | An all-statistics, high-speed algorithm for the analysis of copy number variation in genomes |
| Q35974493 | An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays |
| Q40417660 | An mRNA Gene Expression-Based Signature to Identify FGFR1-Amplified Estrogen Receptor-Positive Breast Tumors |
| Q33511862 | An optimization framework for unsupervised identification of rare copy number variation from SNP array data |
| Q37435376 | Analysis of DNA copy number alterations in ovarian serous tumors identifies new molecular genetic changes in low-grade and high-grade carcinomas |
| Q36022154 | Analysis of Paired Primary-Metastatic Hormone-Receptor Positive Breast Tumors (HRPBC) Uncovers Potential Novel Drivers of Hormonal Resistance |
| Q33495596 | Analysis of array-CGH data using the R and Bioconductor software suite |
| Q34205133 | Analysis of the coding genome of diffuse large B-cell lymphoma |
| Q34080289 | Analysis of the copy number profiles of several tumor samples from the same patient reveals the successive steps in tumorigenesis |
| Q48133395 | Analyzing tumor heterogeneity and driver genes in single myeloid leukemia cells with SBCapSeq |
| Q43084857 | Angiomatous meningiomas have a distinct genetic profile with multiple chromosomal polysomies including polysomy of chromosome 5. |
| Q36855805 | Application of single-cell RNA sequencing in optimizing a combinatorial therapeutic strategy in metastatic renal cell carcinoma. |
| Q38798116 | Application of the cghRA framework to the genomic characterization of Diffuse Large B-Cell Lymphoma. |
| Q33636115 | Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties |
| Q34978321 | Array comparative genomic hybridization identifies novel potential therapeutic targets in cholangiocarcinoma. |
| Q40301002 | Associations between circulating carotenoids, genomic instability and the risk of high-grade prostate cancer. |
| Q38953487 | Aurora kinase-A overexpression in mouse mammary epithelium induces mammary adenocarcinomas harboring genetic alterations shared with human breast cancer |
| Q35114304 | BCL11A is a triple-negative breast cancer gene with critical functions in stem and progenitor cells |
| Q39050679 | BET bromodomain inhibition of MYC-amplified medulloblastoma. |
| Q92852968 | Bioinformatics Analysis for Circulating Cell-Free DNA in Cancer |
| Q30599531 | Bivariate segmentation of SNP-array data for allele-specific copy number analysis in tumour samples |
| Q35683548 | Breast tumors from CHEK2 1100delC-mutation carriers: genomic landscape and clinical implications |
| Q33497034 | CGHnormaliter: an iterative strategy to enhance normalization of array CGH data with imbalanced aberrations |
| Q33610832 | CGHpower: exploring sample size calculations for chromosomal copy number experiments |
| Q49194380 | CINdex: A Bioconductor Package for Analysis of Chromosome Instability in DNA Copy Number Data. |
| Q36161725 | CNARA: reliability assessment for genomic copy number profiles |
| Q92655534 | CNApp, a tool for the quantification of copy number alterations and integrative analysis revealing clinical implications |
| Q33529487 | CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics |
| Q34707100 | CNVrd, a read-depth algorithm for assigning copy-number at the FCGR locus: population-specific tagging of copy number variation at FCGR3B |
| Q33581300 | CNstream: a method for the identification and genotyping of copy number polymorphisms using Illumina microarrays |
| Q34962407 | Cancer gene discovery in mouse and man. |
| Q35525387 | Cell of origin strongly influences genetic selection in a mouse model of T-ALL |
| Q34303956 | Change-point analysis of paired allele-specific copy number variation data |
| Q35932114 | Characterization of FGFR1 Locus in sqNSCLC Reveals a Broad and Heterogeneous Amplicon |
| Q90200432 | Characterization of a head and neck cancer-derived cell line panel confirms the distinct TP53-proficient copy number-silent subclass |
| Q28751743 | Characterization of a naturally occurring breast cancer subset enriched in epithelial-to-mesenchymal transition and stem cell characteristics |
| Q91526219 | Characterization of genetic subclonal evolution in pancreatic cancer mouse models |
| Q38792685 | Characterization of novel low passage primary and metastatic colorectal cancer cell lines |
| Q34289301 | Characterization of whole genome amplified (WGA) DNA for use in genotyping assay development |
| Q21267172 | Chipster: user-friendly analysis software for microarray and other high-throughput data |
| Q35867432 | Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer |
| Q39669947 | Chronic p53-independent p21 expression causes genomic instability by deregulating replication licensing |
| Q34612039 | Clinical and biological relevance of genomic heterogeneity in chronic lymphocytic leukemia |
| Q39985910 | Clinical impact of ABL1 kinase domain mutations and IKZF1 deletion in adults under age 60 with Philadelphia chromosome-positive (Ph+) acute lymphoblastic leukemia (ALL): molecular analysis of CALGB (Alliance) 10001 and 9665. |
| Q35217865 | Clonal evolution revealed by whole genome sequencing in a case of primary myelofibrosis transformed to secondary acute myeloid leukemia |
| Q36924391 | Clonal relatedness between lobular carcinoma in situ and synchronous malignant lesions |
| Q37031141 | Clonal relationships between lobular carcinoma in situ and other breast malignancies |
| Q35019722 | Clonality: an R package for testing clonal relatedness of two tumors from the same patient based on their genomic profiles |
| Q30981105 | Combined Analysis of SNP Array Data Identifies Novel CNV Candidates and Pathways in Ependymoma and Mesothelioma |
| Q34457353 | Combined analysis of genome-wide expression and copy number profiles to identify key altered genomic regions in cancer. |
| Q37148663 | Combining chromosomal arm status and significantly aberrant genomic locations reveals new cancer subtypes |
| Q28741909 | Comparative analysis of copy number variation detection methods and database construction |
| Q34534035 | Comparative analysis of methods for identifying recurrent copy number alterations in cancer |
| Q36157662 | Comparative genomic analysis of primary versus metastatic colorectal carcinomas. |
| Q50724452 | Comparative genomic hybridisation array and DNA sequencing to direct treatment of metastatic breast cancer: a multicentre, prospective trial (SAFIR01/UNICANCER). |
| Q34979403 | Comparative oncogenomic analysis of copy number alterations in human and zebrafish tumors enables cancer driver discovery |
| Q44403278 | Comparison of the glomerular filtration rate in children by the new revised Schwartz formula and a new generalized formula. |
| Q24631412 | Complex landscapes of somatic rearrangement in human breast cancer genomes |
| Q33627191 | Comprehensive characterization of the DNA amplification at 13q34 in human breast cancer reveals TFDP1 and CUL4A as likely candidate target genes. |
| Q38752484 | Comprehensive characterization of the genomic alterations in human gastric cancer. |
| Q40506324 | Comprehensive genetic exploration of skeletal dysplasia using targeted exome sequencing. |
| Q33632265 | Computational analysis of whole-genome differential allelic expression data in human |
| Q92491738 | Concordance of copy number abnormality detection using SNP arrays and Multiplex Ligation-dependent Probe Amplification (MLPA) in acute lymphoblastic leukaemia |
| Q35009429 | Concurrent gene signatures for han chinese breast cancers |
| Q35700459 | Concurrent loss of the PTEN and RB1 tumor suppressors attenuates RAF dependence in melanomas harboring (V600E)BRAF |
| Q34679227 | Condensin II mutation causes T-cell lymphoma through tissue-specific genome instability |
| Q33562300 | Conditional random pattern model for copy number aberration detection |
| Q47683672 | Contralateral breast cancers: Independent cancers or metastases? |
| Q34117394 | Copy number analysis identifies novel interactions between genomic loci in ovarian cancer |
| Q34035973 | Copy number and gene expression differences between African American and Caucasian American prostate cancer |
| Q30970563 | Copy number variant analysis from exome data in 349 patients with epileptic encephalopathy |
| Q34754017 | Copy number variation analysis based on AluScan sequences |
| Q58703328 | Copy number variation is associated with gene expression change in archaea |
| Q34373648 | Copy-number-aware differential analysis of quantitative DNA sequencing data |
| Q30536665 | Copynumber: Efficient algorithms for single- and multi-track copy number segmentation |
| Q90859360 | Cross-species genomics identifies DLG2 as a tumor suppressor in osteosarcoma |
| Q97587326 | Cross-species oncogenic signatures of breast cancer in canine mammary tumors |
| Q57828177 | Cryptic Chromosomal Abnormalities Identified in Children With Congenital Heart Disease |
| Q36530874 | Current analysis platforms and methods for detecting copy number variation |
| Q60921246 | DBS: a fast and informative segmentation algorithm for DNA copy number analysis |
| Q34590458 | DNA copy number analysis of fresh and formalin-fixed specimens by shallow whole-genome sequencing with identification and exclusion of problematic regions in the genome assembly |
| Q38979864 | DNA copy number profiling using single-cell sequencing |
| Q36187834 | DNA methylation analyses of urothelial carcinoma reveal distinct epigenetic subtypes and an association between gene copy number and methylation status |
| Q37702047 | DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival |
| Q97419469 | Decoding the evolutionary response to prostate cancer therapy by plasma genome sequencing |
| Q34746613 | Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes |
| Q36887663 | Delineation of MGMT Hypermethylation as a Biomarker for Veliparib-Mediated Temozolomide-Sensitizing Therapy of Glioblastoma |
| Q41947839 | Detailed Analysis of Focal Chromosome Arm 1q and 6p Amplifications in Urothelial Carcinoma Reveals Complex Genomic Events on 1q, and SOX4 as a Possible Auxiliary Target on 6p. |
| Q100455702 | Detecting rare copy number variants from Illumina genotyping arrays with the CamCNV pipeline: Segmentation of z-scores improves detection and reliability |
| Q38068938 | Detection and interpretation of genomic structural variation in health and disease. |
| Q61757455 | Detection limits of DNA copy number alterations in heterogeneous cell populations |
| Q28082859 | Detection of Genomic Structural Variants from Next-Generation Sequencing Data |
| Q33658568 | Determining frequent patterns of copy number alterations in cancer |
| Q89511089 | Development of a Precision Medicine Workflow in Hematological Cancers, Aalborg University Hospital, Denmark |
| Q27304405 | De novo identification of replication-timing domains in the human genome by deep learning |
| Q30498218 | DiNAMIC: a method to identify recurrent DNA copy number aberrations in tumors |
| Q39433232 | Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation. |
| Q52839213 | Diagnostic whole genome sequencing and split-read mapping for nucleotide resolution breakpoint identification in CNTNAP2 deficiency syndrome. |
| Q36566768 | Digital transcriptome profiling of normal and glioblastoma-derived neural stem cells identifies genes associated with patient survival |
| Q34825832 | Directed targeting of chromatin to the nuclear lamina is mediated by chromatin state and A-type lamins. |
| Q37377920 | Dissecting the gray zone between follicular lymphoma and marginal zone lymphoma using morphological and genetic features |
| Q37094024 | Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq |
| Q54964891 | Distinct epigenetic landscapes underlie the pathobiology of pancreatic cancer subtypes. |
| Q37079676 | Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia. |
| Q36275980 | Diversity and regulatory impact of copy number variation in the primate Macaca fascicularis |
| Q55337080 | Dual origin of relapses in retinoic-acid resistant acute promyelocytic leukemia. |
| Q35876030 | Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells. |
| Q55334265 | Dynamics of multiple resistance mechanisms in plasma DNA during EGFR-targeted therapies in non-small cell lung cancer. |
| Q33562263 | Early dissemination seeds metastasis in breast cancer |
| Q34499441 | Ectopic lymphoid structures function as microniches for tumor progenitor cells in hepatocellular carcinoma |
| Q33750957 | Efficient change point detection for genomic sequences of continuous measurements. |
| Q28387158 | Elucidating Genomic Characteristics of Lung Cancer Progression from In Situ to Invasive Adenocarcinoma |
| Q57539936 | Epigenetic and genetic influences on DNA methylation variation in maize populations |
| Q28748490 | Estimating Shared Copy Number Aberrations for Array CGH Data: The Linear-Median Method |
| Q30584272 | Estimation of copy number alterations from exome sequencing data |
| Q33813491 | Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays |
| Q37312297 | Evaluation of calling algorithms for array-CGH. |
| Q101226497 | Evolution from adherent to suspension: systems biology of HEK293 cell line development |
| Q35787908 | Evolution of DNA repair defects during malignant progression of low-grade gliomas after temozolomide treatment |
| Q33881351 | Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types |
| Q35665894 | Excess of rare, inherited truncating mutations in autism |
| Q34632797 | Exome profiling of primary, metastatic and recurrent ovarian carcinomas in a BRCA1-positive patient |
| Q36109039 | Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway |
| Q35231005 | Exome sequencing-based copy-number variation and loss of heterozygosity detection: ExomeCNV |
| Q30858361 | ExomeAI: detection of recurrent allelic imbalance in tumors using whole-exome sequencing data |
| Q33387269 | Experimental design and data analysis for array comparative genomic hybridization |
| Q33396458 | Exploratory analysis of the copy number alterations in glioblastoma multiforme |
| Q34345106 | Expression and function of the protein tyrosine phosphatase receptor J (PTPRJ) in normal mammary epithelial cells and breast tumors |
| Q35147619 | Expression profiling of primary and metastatic ovarian tumors reveals differences indicative of aggressive disease. |
| Q33605550 | FACADE: a fast and sensitive algorithm for the segmentation and calling of high resolution array CGH data |
| Q37264357 | FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing |
| Q34504704 | FISH Oracle 2: a web server for integrative visualization of genomic data in cancer research |
| Q28602790 | Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression |
| Q34509681 | Fast detection of de novo copy number variants from SNP arrays for case-parent trios |
| Q24317761 | Feedback circuit among INK4 tumor suppressors constrains human glioblastoma development |
| Q33911213 | Focal adhesion kinase: an alternative focus for anti-angiogenesis therapy in ovarian cancer. |
| Q34797092 | Focal chromosomal copy number aberrations identify CMTM8 and GPR177 as new candidate driver genes in osteosarcoma |
| Q92163417 | Forty-five patient-derived xenografts capture the clinical and biological heterogeneity of Wilms tumor |
| Q64102392 | G-quadruplex DNA drives genomic instability and represents a targetable molecular abnormality in ATRX-deficient malignant glioma |
| Q55003146 | GEMiCCL: mining genotype and expression data of cancer cell lines with elaborate visualization. |
| Q35557782 | GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers |
| Q21090956 | GSVD comparison of patient-matched normal and tumor aCGH profiles reveals global copy-number alterations predicting glioblastoma multiforme survival |
| Q34439401 | GWASTools: an R/Bioconductor package for quality control and analysis of genome-wide association studies |
| Q28553888 | Gain- and Loss-of-Function Mutations in the Breast Cancer Gene GATA3 Result in Differential Drug Sensitivity |
| Q37733990 | Gene expression profiling of patient-derived pancreatic cancer xenografts predicts sensitivity to the BET bromodomain inhibitor JQ1: implications for individualized medicine efforts |
| Q33283252 | Gene-resolution analysis of DNA copy number variation using oligonucleotide expression microarrays |
| Q34228348 | Genetic association studies of copy-number variation: should assignment of copy number states precede testing? |
| Q92093077 | Genetic characterization of a unique neuroendocrine transdifferentiation prostate circulating tumor cell-derived eXplant model |
| Q33607569 | Genome Alteration Print (GAP): a tool to visualize and mine complex cancer genomic profiles obtained by SNP arrays |
| Q33652971 | Genome and transcriptome profiling of fibrolamellar hepatocellular carcinoma demonstrates p53 and IGF2BP1 dysregulation |
| Q36446169 | Genome and transcriptome sequencing of lung cancers reveal diverse mutational and splicing events. |
| Q24631915 | Genome sequencing identifies a basis for everolimus sensitivity |
| Q34583947 | Genome wide analysis of chromosomal alterations in oral squamous cell carcinomas revealed over expression of MGAM and ADAM9. |
| Q36338390 | Genome wide profiling in oral squamous cell carcinoma identifies a four genetic marker signature of prognostic significance |
| Q35037090 | Genome-scale analysis of replication timing: from bench to bioinformatics. |
| Q35152098 | Genome-wide analysis of copy number variation identifies candidate gene loci associated with the progression of non-alcoholic fatty liver disease |
| Q54328862 | Genome-wide analysis of oral squamous cell carcinomas revealed over expression of ISG15, Nestin and WNT11. |
| Q51803890 | Genome-wide arrays: quality criteria and platforms to be used in routine diagnostics. |
| Q62785321 | Genome-wide copy number analyses of samples from LACE-Bio project identify novel prognostic and predictive markers in early stage non-small cell lung cancer |
| Q30372139 | Genome-wide copy number analysis of single cells. |
| Q37636972 | Genome-wide copy-number analyses reveal genomic abnormalities involved in transformation of follicular lymphoma |
| Q34354428 | Genome-wide identification of significant aberrations in cancer genome. |
| Q42149634 | Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis |
| Q36243060 | GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants |
| Q46129222 | Genomic Heterogeneity as a Barrier to Precision Medicine in Gastroesophageal Adenocarcinoma. |
| Q36438357 | Genomic aberrations in normal tissue adjacent to HER2-amplified breast cancers: field cancerization or contaminating tumor cells? |
| Q34145806 | Genomic and biological characterization of exon 4 KRAS mutations in human cancer |
| Q98471377 | Genomic characterization of malignant progression in neoplastic pancreatic cysts |
| Q41198823 | Genomic comparison of esophageal squamous cell carcinoma and its precursor lesions by multi-region whole-exome sequencing |
| Q35743316 | Genomic complexity and AKT dependence in serous ovarian cancer |
| Q37119629 | Genomic copy number determination in cancer cells from single nucleotide polymorphism microarrays based on quantitative genotyping corrected for aneuploidy. |
| Q57539937 | Genomic distribution of maize facultative heterochromatin marked by trimethylation of H3K27 |
| Q33840816 | Genomic profiling of advanced-stage oral cancers reveals chromosome 11q alterations as markers of poor clinical outcome |
| Q58752378 | Genomic region detection via Spatial Convex Clustering |
| Q35975049 | Genomic safe harbors permit high β-globin transgene expression in thalassemia induced pluripotent stem cells |
| Q29248536 | Genomic structural variations for cardiovascular and metabolic comorbidity |
| Q24595882 | Genomic subtypes of breast cancer identified by array-comparative genomic hybridization display distinct molecular and clinical characteristics |
| Q92709283 | Genomic subtyping and therapeutic targeting of acute erythroleukemia |
| Q36147372 | Germline copy number variation and ovarian cancer survival |
| Q36440719 | Getting DNA copy numbers without control samples. |
| Q33374614 | Global reorganization of replication domains during embryonic stem cell differentiation |
| Q34085631 | Heritable epigenetic variation among maize inbreds |
| Q33940047 | Heterozygous deletion at the RLN1 locus in a family with testicular germ cell cancer identified by integrating copy number variation data with phenome and interactome information |
| Q37262245 | Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays |
| Q57694286 | High burden of copy number alterations andc-MYCamplification in prostate cancer fromBRCA2germline mutation carriers |
| Q37236234 | High expression of ZNF703 independent of amplification indicates worse prognosis in patients with luminal B breast cancer |
| Q34964608 | High resolution discovery and confirmation of copy number variants in 90 Yoruba Nigerians |
| Q34048024 | High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer |
| Q33757555 | High-resolution genomic profiling of male breast cancer reveals differences hidden behind the similarities with female breast cancer |
| Q37072451 | High-resolution mapping of copy-number alterations with massively parallel sequencing |
| Q33274578 | High-resolution whole-genome analysis of skull base chordomas implicates FHIT loss in chordoma pathogenesis |
| Q39992412 | High-resolution, dual-platform aCGH analysis reveals frequent HIPK2 amplification and increased expression in pilocytic astrocytomas. |
| Q37310374 | High-throughput multiplex sequencing to discover copy number variants in Drosophila |
| Q34165430 | Highly aneuploid zebrafish malignant peripheral nerve sheath tumors have genetic alterations similar to human cancers. |
| Q34779403 | Highly parallel SNP genotyping reveals high-resolution landscape of mono-allelic Ube3a expression associated with locus-wide antisense transcription |
| Q39353163 | Histological specificity of alterations and expression of KIT and KITLG in non-small cell lung carcinoma |
| Q33987589 | Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency |
| Q98292025 | Identification and Characterization of the Copy Number Dosage-Sensitive Genes in Colorectal Cancer |
| Q34306097 | Identification and validation of copy number variants using SNP genotyping arrays from a large clinical cohort |
| Q35223274 | Identification of PHLPP1 as a tumor suppressor reveals the role of feedback activation in PTEN-mutant prostate cancer progression |
| Q58051474 | Identification of a characteristic copy number alteration profile by high-resolution single nucleotide polymorphism arrays associated with metastatic sporadic colorectal cancer |
| Q41874973 | Identification of a neuronal transcription factor network involved in medulloblastoma development |
| Q30841251 | Identification of copy number variants from exome sequence data |
| Q54504858 | Identification of genes putatively involved in the pathogenesis of diffuse large B-cell lymphomas by integrative genomics. |
| Q34412178 | Identification of genomic alterations in oesophageal squamous cell cancer |
| Q34393919 | Identification of molecular pathway aberrations in uterine serous carcinoma by genome-wide analyses. |
| Q64272457 | Identification of portal vein tumor thrombus with an independent clonal origin in hepatocellular carcinoma via multi-omics data analysis |
| Q33495849 | Identification of significant regional genetic variations using continuous CNV values in aCGH data. |
| Q24653015 | Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing |
| Q28741689 | Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer |
| Q33525049 | Identification of two critically deleted regions within chromosome segment 7q35-q36 in EVI1 deregulated myeloid leukemia cell lines |
| Q36333011 | Identifying rhesus macaque gene orthologs using heterospecific human CNV probes |
| Q34261618 | Identity by descent mapping of founder mutations in cancer using high-resolution tumor SNP data |
| Q35128506 | Impact of centralization on aCGH-based genomic profiles for precision medicine in oncology |
| Q39020069 | Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations |
| Q36098562 | Improved multiplex ligation-dependent probe amplification analysis identifies a deleterious PMS2 allele generated by recombination with crossover between PMS2 and PMS2CL. |
| Q81456867 | In vivo differentiation and genomic evolution in adult male germ cell tumors |
| Q36213745 | Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma |
| Q28749457 | Inferring tumor progression from genomic heterogeneity |
| Q28655489 | Insights into the effects of long-term artificial selection on seed size in maize |
| Q93372382 | Integrated Genomic, Epigenomic, and Expression Analyses of Ovarian Cancer Cell Lines |
| Q34458660 | Integrated genome and transcriptome sequencing of the same cell |
| Q48315182 | Integrated genomic characterization of adrenocortical carcinoma. |
| Q33968921 | Integrated genomics of ovarian xenograft tumor progression and chemotherapy response |
| Q33648515 | Integrated high-resolution array CGH and SKY analysis of homozygous deletions and other genomic alterations present in malignant mesothelioma cell lines |
| Q46311036 | Integrated molecular analysis of Tamoxifen-resistant invasive lobular breast cancer cells identifies MAPK and GRM/mGluR signaling as therapeutic vulnerabilities |
| Q90662857 | Integrated molecular characterization of chondrosarcoma reveals critical determinants of disease progression |
| Q36819744 | Integrated multi-omics analysis of oligodendroglial tumours identifies three subgroups of 1p/19q co-deleted gliomas |
| Q36152246 | Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer |
| Q43889503 | Integrative analysis of genome-wide gene copy number changes and gene expression in non-small cell lung cancer. |
| Q28530422 | Integrative analysis of microRNA, mRNA and aCGH data reveals asbestos- and histology-related changes in lung cancer |
| Q33632062 | Integrative analysis reveals selective 9p24.1 amplification, increased PD-1 ligand expression, and further induction via JAK2 in nodular sclerosing Hodgkin lymphoma and primary mediastinal large B-cell lymphoma. |
| Q33503982 | Integrative clustering of multiple genomic data types using a joint latent variable model with application to breast and lung cancer subtype analysis |
| Q34348285 | Integrative genome-wide expression profiling identifies three distinct molecular subgroups of renal cell carcinoma with different patient outcome |
| Q34780974 | Integrative genomic and transcriptomic characterization of matched primary and metastatic liver and colorectal carcinoma. |
| Q51763437 | Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors. |
| Q50527084 | Integrative genomic profiling reveals conserved genetic mechanisms for tumorigenesis in common entities of non-Hodgkin's lymphoma. |
| Q49242804 | Integrative molecular network analysis identifies emergent enzalutamide resistance mechanisms in prostate cancer. |
| Q35990976 | Interactive analysis of large cancer copy number studies with Copy Number Explorer |
| Q30572028 | Interpreting genomic data via entropic dissection |
| Q38263201 | Investigating genomic structure using changept: A Bayesian segmentation model |
| Q51028554 | Is there an age cutoff to apply adult formulas for GFR estimation in children? |
| Q33744507 | KC-SMARTR: An R package for detection of statistically significant aberrations in multi-experiment aCGH data. |
| Q39412455 | Kernel-Based Aggregation of Marker-Level Genetic Association Tests Involving Copy-Number Variation |
| Q34734378 | Learning smoothing models of copy number profiles using breakpoint annotations |
| Q57066463 | Long-read sequencing identified a causal structural variant in an exome-negative case and enabled preimplantation genetic diagnosis |
| Q35565689 | Losing balance: Hardy-Weinberg disequilibrium as a marker for recurrent loss-of-heterozygosity in cancer |
| Q36997364 | Loss of heterozygosity and copy number alterations in flow-sorted bulky cervical cancer |
| Q28512158 | Loss of p53 partially rescues embryonic development of Palb2 knockout mice but does not foster haploinsufficiency of Palb2 in tumour suppression |
| Q34411194 | Loss-of-heterozygosity on chromosome 19q in early-stage serous ovarian cancer is associated with recurrent disease |
| Q31156080 | MD-SeeGH: a platform for integrative analysis of multi-dimensional genomic data |
| Q43214379 | MSB: a mean-shift-based approach for the analysis of structural variation in the genome |
| Q48190414 | MSK1 regulates luminal cell differentiation and metastatic dormancy in ER+ breast cancer |
| Q30940430 | Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content |
| Q42065079 | Major chromosomal breakpoint intervals in breast cancer co-localize with differentially methylated regions |
| Q33846850 | Making sense of cancer genomic data |
| Q33741891 | Mapping of genetic abnormalities of primary tumours from metastatic CRC by high-resolution SNP arrays |
| Q33778721 | Microarray-based maps of copy-number variant regions in European and sub-Saharan populations |
| Q35575353 | Minimal evidence for consistent changes in maize DNA methylation patterns following environmental stress |
| Q34212342 | Mirror extreme BMI phenotypes associated with gene dosage at the chromosome 16p11.2 locus |
| Q30574430 | Modeling read counts for CNV detection in exome sequencing data |
| Q30978444 | Modeling the next generation sequencing read count data for DNA copy number variant study |
| Q27304509 | Modified screening and ranking algorithm for copy number variation detection |
| Q41862781 | Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments |
| Q34602664 | Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes. |
| Q39258865 | Mosaic trisomy 1q: a recurring chromosome anomaly that is a diagnostic challenge and is associated with a Fryns-like phenotype. |
| Q30836209 | Multi-factor data normalization enables the detection of copy number aberrations in amplicon sequencing data |
| Q62644912 | Multi-omic measurements of heterogeneity in HeLa cells across laboratories |
| Q35160825 | Multi-omics analysis defines core genomic alterations in pheochromocytomas and paragangliomas |
| Q39300527 | Multilayered molecular profiling supported the monoclonal origin of metastatic renal cell carcinoma |
| Q34391844 | Mutational analysis reveals the origin and therapy-driven evolution of recurrent glioma |
| Q48310841 | Mutations in EMT-Related Genes in ALK Positive Crizotinib Resistant Non-Small Cell Lung Cancers. |
| Q36273267 | NF2 Loss Promotes Oncogenic RAS-Induced Thyroid Cancers via YAP-Dependent Transactivation of RAS Proteins and Sensitizes Them to MEK Inhibition |
| Q49921097 | Near-tetraploid cancer cells show chromosome instability triggered by replication stress and exhibit enhanced invasiveness. |
| Q33873686 | Network-guided analysis of genes with altered somatic copy number and gene expression reveals pathways commonly perturbed in metastatic melanoma |
| Q33845985 | Neurobeachin (NBEA) is a target of recurrent interstitial deletions at 13q13 in patients with MGUS and multiple myeloma |
| Q37426923 | New combined serum creatinine and cystatin C quadratic formula for GFR assessment in children |
| Q39611384 | New quality measure for SNP array based CNV detection |
| Q37125019 | New rapid scheme for distinguishing the subspecies of the Mycobacterium abscessus group and identifying Mycobacterium massiliense isolates with inducible clarithromycin resistance |
| Q64945044 | Noninvasive prenatal testing for fetal subchromosomal copy number variations and chromosomal aneuploidy by low-pass whole-genome sequencing. |
| Q39206408 | Nonreciprocal chromosomal translocations in renal cancer involve multiple DSBs and NHEJ associated with breakpoint inversion but not necessarily with transcription |
| Q33373518 | Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios |
| Q35034604 | Novel genes associated with colorectal cancer are revealed by high resolution cytogenetic analysis in a patient specific manner |
| Q38634641 | Novel near-diploid ovarian cancer cell line derived from a highly aneuploid metastatic ovarian tumor. |
| Q35940152 | Novel somatic and germline mutations in intracranial germ cell tumours. |
| Q55110051 | Novel variants identified with next-generation sequencing in Polish patients with cone-rod dystrophy. |
| Q33918240 | On the adaptive partition approach to the detection of multiple change-points |
| Q36924050 | On the frequency of copy number variants |
| Q35952198 | On the genome-wide analysis of copy number variants in family-based designs: methods for combining family-based and population-based information for testing dichotomous or quantitative traits, or completely ascertained samples |
| Q35561968 | Optimizing sparse sequencing of single cells for highly multiplex copy number profiling |
| Q43115425 | Outcome of children with hypodiploid ALL treated with risk-directed therapy based on MRD levels |
| Q34172033 | Outcomes of children with BCR-ABL1–like acute lymphoblastic leukemia treated with risk-directed therapy based on the levels of minimal residual disease |
| Q38500553 | Overexpression of the oncostatin M receptor in cervical squamous cell carcinoma cells is associated with a pro-angiogenic phenotype and increased cell motility and invasiveness |
| Q36004465 | Paired exome analysis of Barrett's esophagus and adenocarcinoma |
| Q37666205 | Pan-cancer patterns of somatic copy number alteration |
| Q35107920 | Parent-specific copy number in paired tumor-normal studies using circular binary segmentation |
| Q33742660 | Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue. |
| Q35864949 | Penalized weighted low-rank approximation for robust recovery of recurrent copy number variations |
| Q35848760 | Performance evaluation of DNA copy number segmentation methods |
| Q40898690 | Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast |
| Q34482033 | Piecewise polynomial representations of genomic tracks |
| Q50997123 | Platform comparisons for identification of breast cancers with a BRCA-like copy number profile. |
| Q41864004 | Polycomb Repressor Complex 1 Member, BMI1 Contributes to Urothelial Tumorigenesis through p16-Independent Mechanisms |
| Q35291795 | Population structure and comparative genome hybridization of European flor yeast reveal a unique group of Saccharomyces cerevisiae strains with few gene duplications in their genome |
| Q90103949 | Population-wide copy number variation calling using variant call format files from 6,898 individuals |
| Q36010314 | Prediction of cytogenetic abnormalities with gene expression profiles |
| Q48682753 | Prediction of peripheral neuropathy in multiple myeloma patients receiving bortezomib and thalidomide: a genetic study based on a single nucleotide polymorphism array. |
| Q90099730 | Predisposition to childhood acute lymphoblastic leukemia caused by a constitutional translocation disrupting ETV6 |
| Q27316268 | Progesterone receptor modulates ERα action in breast cancer |
| Q35696363 | Prognostic classification of pediatric medulloblastoma based on chromosome 17p loss, expression of MYCC and MYCN, and Wnt pathway activation |
| Q36293691 | Quantitative assessment of single-cell whole genome amplification methods for detecting copy number variation using hippocampal neurons |
| Q97523774 | Quantitative characterization of tumor cell-free DNA shortening |
| Q38457744 | RB1 gene inactivation by chromothripsis in human retinoblastoma |
| Q37266084 | RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions |
| Q36331974 | RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome |
| Q34647928 | Rare genomic structural variants in complex disease: lessons from the replication of associations with obesity |
| Q24605530 | Rare structural variants found in attention-deficit hyperactivity disorder are preferentially associated with neurodevelopmental genes |
| Q33815928 | ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads |
| Q37440638 | Rearrangement of CRLF2 in B-progenitor- and Down syndrome-associated acute lymphoblastic leukemia |
| Q34381772 | Reconstructing DNA copy number by joint segmentation of multiple sequences |
| Q40893949 | Reconstructing breakage fusion bridge architectures using noisy copy numbers |
| Q36949683 | Recurrent R-spondin fusions in colon cancer |
| Q58734416 | Recurrent WNT pathway alterations are frequent in relapsed small cell lung cancer |
| Q28385236 | Recurrent epimutations activate gene body promoters in primary glioblastoma |
| Q50657891 | Recurrent genetic defects in classical Hodgkin lymphoma cell lines. |
| Q54288575 | Recurrent inactivating mutations of ARID2 in non-small cell lung carcinoma. |
| Q46269827 | Recurrent pre-existing and acquired DNA copy number alterations, including focal TERT gains, in neuroblastoma central nervous system metastases |
| Q57167480 | Recurring Genomic Structural Variation Leads to Clonal Instability and Loss of Productivity |
| Q57519943 | Recursive kernel density estimators under missing data |
| Q89837686 | Relapse-Fated Latent Diagnosis Subclones in Acute B Lineage Leukemia Are Drug Tolerant and Possess Distinct Metabolic Programs |
| Q54686051 | Relapsed childhood high hyperdiploid acute lymphoblastic leukemia: presence of preleukemic ancestral clones and the secondary nature of microdeletions and RTK-RAS mutations. |
| Q36060622 | Relax with CouchDB--into the non-relational DBMS era of bioinformatics |
| Q33989254 | Remodeling of the methylation landscape in breast cancer metastasis. |
| Q90375281 | Repair of multiple simultaneous double-strand breaks causes bursts of genome-wide clustered hypermutation |
| Q54165480 | Rhabdomyosarcomas in children with neurofibromatosis type I: A national historical cohort. |
| Q41136538 | Robust BRCA1-like classification of copy number profiles of samples repeated across different datasets and platforms |
| Q33595006 | SEURAT: visual analytics for the integrated analysis of microarray data |
| Q33374429 | SIGMA2: a system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes |
| Q50454918 | SOX2 controls tumour initiation and cancer stem-cell functions in squamous-cell carcinoma. |
| Q30768936 | SPARSE INTEGRATIVE CLUSTERING OF MULTIPLE OMICS DATA SETS. |
| Q36110907 | STAR RNA-binding protein Quaking suppresses cancer via stabilization of specific miRNA |
| Q43045850 | Scalable whole-exome sequencing of cell-free DNA reveals high concordance with metastatic tumors. |
| Q81290124 | Screening for copy-number alterations and loss of heterozygosity in chronic lymphocytic leukemia--a comparative study of four differently designed, high resolution microarray platforms |
| Q33641977 | SegAnnDB: interactive Web-based genomic segmentation |
| Q42097541 | Segmentation and estimation for SNP microarrays: a Bayesian multiple change-point approach |
| Q33736439 | Segmentation of genomic and transcriptomic microarrays data reveals major correlation between DNA copy number aberrations and gene-loci expression |
| Q36993047 | Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays |
| Q45827240 | Selection of patients for hepatic surgery of colorectal cancer liver metastasis based on genomic aberrations |
| Q28741460 | Selective genomic copy number imbalances and probability of recurrence in early-stage breast cancer |
| Q30978860 | Selective regain of egfr gene copies in CD44+/CD24-/low breast cancer cellular model MDA-MB-468. |
| Q33946035 | SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data |
| Q37273694 | Single nucleotide polymorphism arrays: a decade of biological, computational and technological advances |
| Q33784734 | Somatic mutation profiles of MSI and MSS colorectal cancer identified by whole exome next generation sequencing and bioinformatics analysis |
| Q30472845 | Somatic structural rearrangements in genetically engineered mouse mammary tumors |
| Q31143081 | Sparse representation and Bayesian detection of genome copy number alterations from microarray data |
| Q36245906 | Statistical Approach to Decreasing the Error Rate of Noninvasive Prenatal Aneuploid Detection caused by Maternal Copy Number Variation |
| Q37601955 | Statistical issues in the analysis of DNA Copy Number Variations |
| Q39332745 | Statistical model-based testing to evaluate the recurrence of genomic aberrations. |
| Q30276754 | Stepwise Signal Extraction via Marginal Likelihood |
| Q48222476 | Stromal gene expression defines poor-prognosis subtypes in colorectal cancer |
| Q34085173 | Structural and operational complexity of the Geobacter sulfurreducens genome. |
| Q30410213 | SubcloneSeeker: a computational framework for reconstructing tumor clone structure for cancer variant interpretation and prioritization |
| Q57828161 | Submicroscopic Chromosomal Copy Number Variations Identified in Children With Hypoplastic Left Heart Syndrome |
| Q35779241 | Subtype and pathway specific responses to anticancer compounds in breast cancer |
| Q34350077 | Systems consequences of amplicon formation in human breast cancer |
| Q85072660 | T-cell lymphoblastic lymphoma shows differences and similarities with T-cell acute lymphoblastic leukemia by genomic and gene expression analyses |
| Q34345632 | TAGCNA: a method to identify significant consensus events of copy number alterations in cancer |
| Q39019239 | THE SCREENING AND RANKING ALGORITHM FOR CHANGE-POINTS DETECTION IN MULTIPLE SAMPLES. |
| Q37190114 | THE SCREENING AND RANKING ALGORITHM TO DETECT DNA COPY NUMBER VARIATIONS. |
| Q34338441 | TP53 mutational status is a potential marker for risk stratification in Wilms tumour with diffuse anaplasia |
| Q36950276 | Target inference from collections of genomic intervals |
| Q21183964 | Targeted next-generation sequencing of head and neck squamous cell carcinoma identifies novel genetic alterations in HPV+ and HPV- tumors |
| Q28685216 | The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation |
| Q36175992 | The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts |
| Q38852406 | The Mutational Landscape of Circulating Tumor Cells in Multiple Myeloma. |
| Q35669976 | The clonal relationships between pre-cancer and cancer revealed by ultra-deep sequencing |
| Q26995532 | The consequences of chromosomal aneuploidy on the transcriptome of cancer cells |
| Q35135027 | The correlation pattern of acquired copy number changes in 164 ETV6/RUNX1-positive childhood acute lymphoblastic leukemias |
| Q35817838 | The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh. |
| Q40467056 | The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells. |
| Q35642077 | The fitness consequences of aneuploidy are driven by condition-dependent gene effects |
| Q33881358 | The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance |
| Q24632989 | The genomic and transcriptomic landscape of a HeLa cell line |
| Q37574743 | The genomic landscape of hypodiploid acute lymphoblastic leukemia |
| Q36225715 | The genomic landscape of juvenile myelomonocytic leukemia |
| Q42217525 | The genomic road to invasion-examining the similarities and differences in the genomes of associated oral pre-cancer and cancer samples |
| Q37003447 | The mutational landscape of adenoid cystic carcinoma |
| Q34190027 | The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma |
| Q37232177 | The repertoire of somatic genetic alterations of acinic cell carcinomas of the breast: an exploratory, hypothesis-generating study |
| Q48190650 | The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution. |
| Q28300185 | The somatic genomic landscape of glioblastoma |
| Q42183763 | The subclonal structure and genomic evolution of oral squamous cell carcinoma revealed by ultra-deep sequencing |
| Q37320317 | The transcription unit architecture of the Escherichia coli genome |
| Q36974765 | Topographic enhancement mapping of the cancer-associated breast stroma using breast MRI. |
| Q37217049 | Transmission disequilibrium of small CNVs in simplex autism |
| Q33882930 | Tumor cells disseminate early, but immunosurveillance limits metastatic outgrowth, in a mouse model of melanoma. |
| Q58567735 | Tumor mutational burden is a determinant of immune-mediated survival in breast cancer |
| Q33576281 | TumorBoost: normalization of allele-specific tumor copy numbers from a single pair of tumor-normal genotyping microarrays |
| Q34785286 | Two Distinct Categories of Focal Deletions in Cancer Genomes |
| Q58051484 | Unique genetic profile of sporadic colorectal cancer liver metastasis versus primary tumors as defined by high-density single-nucleotide polymorphism arrays |
| Q56985300 | Unsupervised correction of gene-independent cell responses to CRISPR-Cas9 targeting |
| Q90326487 | Using low-coverage whole genome sequencing technique to analyze the chromosomal copy number alterations in the exfoliative cells of cervical cancer |
| Q38416233 | Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens |
| Q41791072 | Using the R Package crlmm for Genotyping and Copy Number Estimation. |
| Q51019551 | Variation in genomic landscape of clear cell renal cell carcinoma across Europe. |
| Q34241728 | Whole genome sequencing of matched primary and metastatic acral melanomas |
| Q55312090 | Whole-exome sequencing of cell-free DNA and circulating tumor cells in multiple myeloma. |
| Q33529307 | Whole-genome sequencing of a laboratory-evolved yeast strain |
| Q27852827 | Whole-genome sequencing reveals complex mechanisms of intrinsic resistance to BRAF inhibition |
| Q41708245 | Whole-genome single-cell copy number profiling from formalin-fixed paraffin-embedded samples |
| Q42171696 | Widespread duplications in the genomes of laboratory stocks of Dictyostelium discoideum |
| Q40960869 | biomvRhsmm: genomic segmentation with hidden semi-Markov model |
| Q34030518 | cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate |
| Q52593457 | iSeg: an efficient algorithm for segmentation of genomic and epigenomic data. |
| Q34190472 | miRNA expression profiles in myelodysplastic syndromes reveal Epstein-Barr virus miR-BART13 dysregulation |
| Q30833306 | p120-catenin prevents multinucleation through control of MKLP1-dependent RhoA activity during cytokinesis |
Search more.