| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1022668507 |
| P356 | DOI | 10.1186/1471-2164-14-847 |
| P8608 | Fatcat ID | release_jtfegatsufbc5oe7idfhkoi5da |
| P932 | PMC publication ID | 4046813 |
| P698 | PubMed publication ID | 24299161 |
| P5875 | ResearchGate publication ID | 259152428 |
| P50 | author | Gareth D Weedall | Q55176092 |
| Prudence W.H. Wong | Q58138171 | ||
| Morozov IYu | Q69565530 | ||
| P2093 | author name string | Huihai Wu | |
| Mark X Caddick | |||
| Gwendolyn Cowley | |||
| Paulius Palaima | |||
| Christopher Sibthorp | |||
| P2860 | cites work | Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs | Q21144890 |
| Ultrafast and memory-efficient alignment of short DNA sequences to the human genome | Q21183894 | ||
| Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88 | Q21972843 | ||
| Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus | Q21972844 | ||
| Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus | Q22065252 | ||
| Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae | Q22122464 | ||
| Genome sequencing and analysis of Aspergillus oryzae | Q22122467 | ||
| Diverse transcriptional initiation revealed by fine, large-scale mapping of mRNA start sites | Q24522529 | ||
| RNA-Seq: a revolutionary tool for transcriptomics | Q24596169 | ||
| Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage | Q24616834 | ||
| The Pfam protein families database | Q24619716 | ||
| Identification and characterization of the potential promoter regions of 1031 kinds of human genes | Q24619773 | ||
| Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation | Q24627354 | ||
| Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88 | Q24628736 | ||
| TopHat: discovering splice junctions with RNA-Seq | Q24655505 | ||
| Computational analysis of core promoters in the Drosophila genome | Q24803783 | ||
| EMBOSS: the European Molecular Biology Open Software Suite | Q27860491 | ||
| The transcriptional landscape of the mammalian genome | Q27861110 | ||
| Large-scale transcriptional activity in chromosomes 21 and 22 | Q28216457 | ||
| 5'-end SAGE for the analysis of transcriptional start sites | Q28276111 | ||
| Rfam 11.0: 10 years of RNA families | Q28278745 | ||
| MEME SUITE: tools for motif discovery and searching | Q29547204 | ||
| Antisense transcription in the mammalian transcriptome | Q29547536 | ||
| Evolution and functions of long noncoding RNAs | Q29614331 | ||
| RNA maps reveal new RNA classes and a possible function for pervasive transcription | Q29614334 | ||
| Genome-wide analysis of mammalian promoter architecture and evolution | Q29616717 | ||
| A high-resolution map of transcription in the yeast genome | Q30014822 | ||
| Robust analysis of 5'-transcript ends: a high-throughput protocol for characterization of sequence diversity of transcription start sites | Q33288504 | ||
| SnoRNAs from the filamentous fungus Neurospora crassa: structural, functional and evolutionary insights. | Q33515433 | ||
| The Aspergillus Genome Database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community | Q33601074 | ||
| The 2008 update of the Aspergillus nidulans genome annotation: a community effort | Q33677655 | ||
| Regulatory roles of natural antisense transcripts | Q33773381 | ||
| Subtle hydrophobic interactions between the seventh residue of the zinc finger loop and the first base of an HGATAR sequence determine promoter-specific recognition by the Aspergillus nidulans GATA factor AreA. | Q33886975 | ||
| Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms | Q33957242 | ||
| CADRE: the Central Aspergillus Data REpository 2012 | Q34073654 | ||
| Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing | Q34080071 | ||
| Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species | Q34156146 | ||
| Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing | Q34388528 | ||
| Genome-wide analysis of promoter architecture in Drosophila melanogaster. | Q34548248 | ||
| 5'-Serial Analysis of Gene Expression studies reveal a transcriptomic switch during fruiting body development in Coprinopsis cinerea | Q34628588 | ||
| Zinc-mediated RNA fragmentation allows robust transcript reassembly upon whole transcriptome RNA-Seq. | Q34633193 | ||
| Trancriptional landscape of Aspergillus niger at breaking of conidial dormancy revealed by RNA-sequencing | Q34664803 | ||
| YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation | Q35208601 | ||
| Global transcriptome changes underlying colony growth in the opportunistic human pathogen Aspergillus fumigatus | Q35666165 | ||
| Cloning of the regulatory gene areA mediating nitrogen metabolite repression in Aspergillus nidulans | Q36425222 | ||
| RNA silencing gene truncation in the filamentous fungus Aspergillus nidulans | Q36452676 | ||
| The diverse applications of RNA-seq for functional genomic studies in Aspergillus fumigatus | Q36493269 | ||
| Extensive transcript diversity and novel upstream open reading frame regulation in yeast | Q36589002 | ||
| Mammalian RNA polymerase II core promoters: insights from genome-wide studies | Q36814333 | ||
| Deep cap analysis gene expression (CAGE): genome-wide identification of promoters, quantification of their expression, and network inference | Q37161387 | ||
| Messenger RNA export from the nucleus: a series of molecular wardrobe changes | Q37529903 | ||
| NMD: a multifaceted response to premature translational termination | Q37675497 | ||
| Characteristics of core promoter types with respect to gene structure and expression in Arabidopsis thaliana | Q38675556 | ||
| Antisense silencing of the creA gene in Aspergillus nidulans. | Q39488051 | ||
| Deletion of the 389 N-terminal residues of the transcriptional activator AREA does not result in nitrogen metabolite derepression in Aspergillus nidulans | Q39568430 | ||
| Sequences important for gene expression in filamentous fungi. | Q39705321 | ||
| Nitrogen metabolite signalling involves the C-terminus and the GATA domain of the Aspergillus transcription factor AREA and the 3' untranslated region of its mRNA. | Q41065272 | ||
| Germination of conidia of Aspergillus niger is accompanied by major changes in RNA profiles | Q41935620 | ||
| The bZIP transcription factor MeaB mediates nitrogen metabolite repression at specific loci. | Q42008814 | ||
| Transcriptional changes in the transition from vegetative cells to asexual development in the model fungus Aspergillus nidulans. | Q43248545 | ||
| Detection of alternative splice variants at the proteome level in Aspergillus flavus | Q44063371 | ||
| Cryptic peroxisomal targeting via alternative splicing and stop codon read-through in fungi | Q44521029 | ||
| Pervasive antisense transcription is evolutionarily conserved in budding yeast | Q45834052 | ||
| Transcriptomic profiling of Aspergillus flavus in response to 5-azacytidine | Q46832805 | ||
| Molecular characterisation of meaB, a novel gene affecting nitrogen metabolite repression in Aspergillus nidulans | Q48063100 | ||
| Separating real motifs from their artifacts | Q48351366 | ||
| L-arginine influences the structure and function of arginase mRNA in Aspergillus nidulans. | Q54559500 | ||
| Specific binding sites in the alcR and alcA promoters of the ethanol regulon for the CREA repressor mediating carbon catabolite repression in Aspergillus nidulans. | Q54660920 | ||
| Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes | Q55865811 | ||
| The effect of temperature on Natural Antisense Transcript (NAT) expression in Aspergillus flavus | Q57090218 | ||
| Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi | Q62090223 | ||
| The genetics of Aspergillus nidulans | Q62650991 | ||
| The induction and repression of nitrate reductase in the fungus Aspergillus nidulans | Q62667879 | ||
| Starvation stress modulates the expression of the Aspergillus nidulans brlA regulatory gene | Q62667978 | ||
| Transcription of Aspergillus nidulans pacC is modulated by alternative RNA splicing of palB | Q62670433 | ||
| Identification of a novel class of target genes and a novel type of binding sequence of heat shock transcription factor in Saccharomyces cerevisiae | Q81263732 | ||
| Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq | Q84452832 | ||
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | transcriptome | Q252857 |
| Aspergillus nidulans | Q683881 | ||
| Putative bZIP-containing transcription factor | Q62641406 | ||
| P304 | page(s) | 847 | |
| P577 | publication date | 2013-12-03 | |
| P1433 | published in | BMC Genomics | Q15765854 |
| P1476 | title | Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters | |
| P478 | volume | 14 |
| Q51787143 | 'Students-as-partners' scheme enhances postgraduate students' employability skills while addressing gaps in bioinformatics education. |
| Q47153753 | A eukaryotic nicotinate-inducible gene cluster: convergent evolution in fungi and bacteria. |
| Q38990545 | A second component of the SltA-dependent cation tolerance pathway in Aspergillus nidulans |
| Q27316996 | Application of a new dual localization-affinity purification tag reveals novel aspects of protein kinase biology in Aspergillus nidulans |
| Q39451579 | Beyond asexual development: modifications in the gene expression profile caused by the absence of the Aspergillus nidulans transcription factor FlbB. |
| Q33645502 | Characterization of natural antisense transcript, sclerotia development and secondary metabolism by strand-specific RNA sequencing of Aspergillus flavus |
| Q37673008 | Comparative Transcriptome Analysis of Penicillium citrinum Cultured with Different Carbon Sources Identifies Genes Involved in Citrinin Biosynthesis |
| Q42363293 | Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper. |
| Q39869587 | Development and validation of a custom microarray for global transcriptome profiling of the fungus Aspergillus nidulans |
| Q42376528 | Emergence and loss of spliceosomal twin introns |
| Q41685058 | Fungal biology in the post-genomic era. |
| Q41591526 | Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction. |
| Q35710662 | Identification of a critical determinant that enables efficient fatty acid synthesis in oleaginous fungi |
| Q34455685 | Nup2 requires a highly divergent partner, NupA, to fulfill functions at nuclear pore complexes and the mitotic chromatin region |
| Q34464338 | Origin, diversification and substrate specificity in the family of NCS1/FUR transporters |
| Q90641604 | Promoter tools for further development of Aspergillus oryzae as a platform for fungal secondary metabolite production |
| Q62570591 | Reticulate evolution in eukaryotes: Origin and evolution of the nitrate assimilation pathway |
| Q35824626 | Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea |
| Q58585212 | Systems and Synthetic Biology Approaches to Engineer Fungi for Fine Chemical Production |
| Q64084264 | The role of the GATA transcription factor AreB in regulation of nitrogen and carbon metabolism in Aspergillus nidulans |
| Q36361222 | Transcriptome analysis of smut fungi reveals widespread intergenic transcription and conserved antisense transcript expression. |
| Q38248415 | Transcriptome characteristics of filamentous fungi deduced using high-throughput analytical technologies. |
| Q36175240 | Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat |
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