Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls

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Phylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1026662769
P356DOI10.1186/1471-2229-14-79
P932PMC publication ID4108027
P698PubMed publication ID24666997
P5875ResearchGate publication ID261102239

P50authorJoshua P. DerQ36588801
Loren HonaasQ73467478
Claude W dePamphilisQ92093351
Thomas W McCarthyQ96060967
P2093author name stringCharles T Anderson
P2860cites workA comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell wallsQ34951210
A complex plant cell wall polysaccharide: rhamnogalacturonan II. A structure in quest of a function.Q35135559
Galacturonosyltransferase (GAUT)1 and GAUT7 are the core of a plant cell wall pectin biosynthetic homogalacturonan:galacturonosyltransferase complexQ35647642
STRUCTURE AND BIOGENESIS OF THE CELL WALLS OF GRASSES.Q35687284
Glycosyl transferases in family 61 mediate arabinofuranosyl transfer onto xylan in grasses.Q35734973
Cell wall mechanics and growth control in plants: the role of pectins revisitedQ36010955
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New insights into pectin methylesterase structure and functionQ36820520
Broad phylogenomic sampling and the sister lineage of land plantsQ21134917
The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by PlantsQ22065864
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed modelsQ27860746
OrthoMCL: Identification of Ortholog Groups for Eukaryotic GenomesQ27860860
The glycosyltransferase repertoire of the spikemoss Selaginella moellendorffii and a comparative study of its cell wallQ28730152
Phytozome: a comparative platform for green plant genomicsQ29616763
Ancestral polyploidy in seed plants and angiospermsQ29617362
Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growthQ29617996
Evolution and function of the plant cell wall synthesis-related glycosyltransferase family 8.Q30389987
Arabinogalactan proteins are required for apical cell extension in the moss Physcomitrella patensQ30799627
The PARVUS gene is expressed in cells undergoing secondary wall thickening and is essential for glucuronoxylan biosynthesisQ30835871
Restricted cell elongation in Arabidopsis hypocotyls is associated with a reduced average pectin esterification levelQ33287928
Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in ArabidopsisQ33332079
A pectin glucuronyltransferase gene is essential for intercellular attachment in the plant meristemQ33337909
The TUMOROUS SHOOT DEVELOPMENT2 gene of Arabidopsis encoding a putative methyltransferase is required for cell adhesion and co-ordinated plant developmentQ33343983
Pectin-induced changes in cell wall mechanics underlie organ initiation in ArabidopsisQ33352297
A CELLULOSE SYNTHASE (CESA) gene essential for gametophore morphogenesis in the moss Physcomitrella patensQ33352784
Analysis of promoter activity of members of the PECTATE LYASE-LIKE (PLL) gene family in cell separation in ArabidopsisQ33637878
Altered middle lamella homogalacturonan and disrupted deposition of (1-->5)-alpha-L-arabinan in the pericarp of Cnr, a ripening mutant of tomatoQ33946528
Evolution of plant nucleotide-sugar interconversion enzymesQ34085862
Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferaseQ34597135
Pectin structure and biosynthesisQ37166506
Homogalacturonan methyl-esterification and plant developmentQ37613998
Biosynthesis of pectinQ37739038
Evolving views of pectin biosynthesisQ38085640
Infection of the Sunagoke moss panels with fungal pathogens hampers sustainable greening in urban environments.Q38865250
The mechanism of gene targeting in Physcomitrella patens: homologous recombination, concatenation and multiple integrationQ40899818
Demethylesterification of the primary wall by PECTIN METHYLESTERASE35 provides mechanical support to the Arabidopsis stemQ42507905
Two Arabidopsis thaliana genes encode functional pectin methylesterase inhibitorsQ42618003
Arabidopsis thaliana T-DNA mutants implicate GAUT genes in the biosynthesis of pectin and xylan in cell walls and seed testaQ43262275
Loss-of-function mutation of REDUCED WALL ACETYLATION2 in Arabidopsis leads to reduced cell wall acetylation and increased resistance to Botrytis cinereaQ43680707
Requirement of borate cross-linking of cell wall rhamnogalacturonan II for Arabidopsis growthQ43779043
Molecular basis of C(2+)-induced gelation in alginates and pectins: the egg-box model revisitedQ43845396
Occurrence of the primary cell wall polysaccharide rhamnogalacturonan II in pteridophytes, lycophytes, and bryophytes. Implications for the evolution of vascular plantsQ44690125
The cellulose synthase (CESA) gene superfamily of the moss Physcomitrella patensQ44933434
The biosynthesis of UDP-galacturonic acid in plants. Functional cloning and characterization of Arabidopsis UDP-D-glucuronic acid 4-epimeraseQ45162642
Polygalacturonases: many genes in search of a function.Q45956798
Pectin biosynthesis: GALS1 in Arabidopsis thaliana is a β-1,4-galactan β-1,4-galactosyltransferase.Q46015454
Functional characterisation of a putative rhamnogalacturonan II specific xylosyltransferaseQ46405523
Homogalacturonan synthesis in Arabidopsis thaliana requires a Golgi-localized protein with a putative methyltransferase domain.Q50689854
Both chloronemal and caulonemal cells expand by tip growth in the moss Physcomitrella patens.Q50690966
Organ-specific, developmental, hormonal and stress regulation of expression of putative pectate lyase genes in Arabidopsis.Q51988383
Molecular evolution and expression divergence of the Populus polygalacturonase supergene family shed light on the evolution of increasingly complex organs in plants.Q53123136
Expression of polygalacturonases and evidence to support their role during cell separation processes in Arabidopsis thaliana.Q53522601
The structure and biochemistry of charophycean cell walls: I. Pectins of Penium margaritaceum.Q53587856
Molecular analysis of a family of Arabidopsis genes related to galacturonosyltransferases.Q54388932
High-throughput mapping of cell-wall polymers within and between plants using novel microarraysQ56028348
Pectin and the role of the physical properties of the cell wall in pollen tube growth of Solanum chacoenseQ62137127
Rhamnogalacturonan-II, a pectic polysaccharide in the walls of growing plant cell, forms a dimer that is covalently cross-linked by a borate ester. In vitro conditions for the formation and hydrolysis of the dimerQ71514690
Overexpression of polygalacturonase in transgenic apple trees leads to a range of novel phenotypes involving changes in cell adhesionQ74099588
Elaborate spatial patterning of cell-wall PME and PMEI at the pollen tube tip involves PMEI endocytosis, and reflects the distribution of esterified and de-esterified pectinsQ81522540
Spatial distribution of polygalacturonase-inhibiting proteins in Arabidopsis and their expression induced by Stemphylium solani infectionQ84540652
Rhamnogalacturonan II structure shows variation in the side chains monosaccharide composition and methylation status within and across different plant speciesQ87005556
P921main subjectcell wallQ128700
phylogeneticsQ171184
Physcomitrella patensQ1645541
P304page(s)79
P577publication date2014-03-26
P1433published inBMC Plant BiologyQ15760766
P1476titlePhylogenetic analysis of pectin-related gene families in Physcomitrella patens and nine other plant species yields evolutionary insights into cell walls
P478volume14

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cites work (P2860)
Q99548805A Genomic Perspective on the Evolutionary Diversity of the Plant Cell Wall
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Q97883631Diversity of Pectin Rhamnogalacturonan I Rhamnosyltransferases in Glycosyltransferase Family 106
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Q48122857Gene Regulatory Networks for the Haploid-to-Diploid Transition of Chlamydomonas reinhardtii
Q88965554Genome-Wide Identification and Expression Analysis of the UGlcAE Gene Family in Tomato
Q36661034Immuno and Affinity Cytochemical Analysis of Cell Wall Composition in the Moss Physcomitrella patens
Q34342037Methanol and ethanol modulate responses to danger- and microbe-associated molecular patterns
Q91715749Overview of the Role of Cell Wall DUF642 Proteins in Plant Development
Q47604955POLYGALACTURONASE INVOLVED IN EXPANSION3 Functions in Seedling Development, Rosette Growth, and Stomatal Dynamics in Arabidopsis thaliana
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Q35688445Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis
Q64106551Synergistic Pectin Degradation and Guard Cell Pressurization Underlie Stomatal Pore Formation

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