Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis

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Identification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis is …
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scholarly articleQ13442814

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P819ADS bibcode2014PLoSO...994875O
P356DOI10.1371/JOURNAL.PONE.0094875
P8608Fatcat IDrelease_5hdjutgixjhopfklwuylpkeb7e
P932PMC publication ID3990576
P698PubMed publication ID24743599
P5875ResearchGate publication ID261757104

P50authorRichard RobertsQ309816
Tyson A ClarkQ56480099
Peggy GaraultQ56521802
Douwe van SinderenQ57025338
Francesca BottaciniQ46246634
P2093author name stringDebbie Watson
Jonas Korlach
Johan E T van Hylckama Vlieg
Tamara Smokvina
Christian Chervaux
Mary O' Connell Motherway
P2860cites workFunctional analysis of the pBC1 replicon from Bifidobacterium catenulatum L48.Q50932748
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Bifidobacterium animalis subsp. lactis fermented milk product reduces inflammation by altering a niche for colitogenic microbesQ34241570
Sequence motifs characteristic for DNA [cytosine-N4] and DNA [adenine-N6] methyltransferases. Classification of all DNA methyltransferasesQ34299649
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Functional genome analysis of Bifidobacterium breve UCC2003 reveals type IVb tight adherence (Tad) pili as an essential and conserved host-colonization factorQ35090999
Genome sequence of the probiotic strain Bifidobacterium animalis subsp. lactis CNCM I-2494.Q35274586
In vivo restriction by LlaI is encoded by three genes, arranged in an operon with llaIM, on the conjugative Lactococcus plasmid pTR2030.Q35576499
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Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection.Q35750853
In vivo genetic exchange of a functional domain from a type II A methylase between lactococcal plasmid pTR2030 and a virulent bacteriophageQ36149422
A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003.Q36155924
A two-component regulatory system controls autoregulated serpin expression in Bifidobacterium breve UCC2003.Q36277139
Characterization of ApuB, an extracellular type II amylopullulanase from Bifidobacterium breve UCC2003.Q36943474
Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003Q37263206
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A bile-inducible membrane protein mediates bifidobacterial bile resistance.Q37273451
Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003.Q37273522
Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003.Q37274662
Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003Q37283905
Consumption of fermented milk product with probiotic modulates brain activityQ37340274
Lactococcal plasmid pNP40 encodes a novel, temperature-sensitive restriction-modification system.Q37552862
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Ribose utilization by the human commensal Bifidobacterium breve UCC2003Q41869901
Improvement of bacterial transformation efficiency using plasmid artificial modificationQ41916699
Development of a double-crossover markerless gene deletion system in Bifidobacterium longum: functional analysis of the α-galactosidase gene for raffinose assimilationQ42110305
The HgaI restriction-modification system contains two cytosine methylase genes responsible for modification of different DNA strandsQ42622289
Improvement of transformation efficiency through in vitro methylation and SacII site mutation of plasmid vector in Bifidobacterium longum MG1.Q42973242
Tough nuts to crack: site-directed mutagenesis of bifidobacteria remains a challenge.Q43067525
M1.MboII and M2.MboII type IIS methyltransferases: different specificities, the same targetQ44535410
Clinical trial: the effects of a fermented milk product containing Bifidobacterium lactis DN-173 010 on abdominal distension and gastrointestinal transit in irritable bowel syndrome with constipation.Q45826312
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P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P921main subjectBifidobacterium animalis subsp. lactisQ21365200
P304page(s)e94875
P577publication date2014-04-17
P1433published inPLOS OneQ564954
P1476titleIdentification of restriction-modification systems of Bifidobacterium animalis subsp. lactis CNCM I-2494 by SMRT sequencing and associated methylome analysis
P478volume9

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