The solution structure of [d(CGC)r(aaa)d(TTTGCG)](2): hybrid junctions flanked by DNA duplexes

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The solution structure of [d(CGC)r(aaa)d(TTTGCG)](2): hybrid junctions flanked by DNA duplexes is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/28.6.1322
P932PMC publication ID111055
P698PubMed publication ID10684926

P2093author name stringCheng JW
Hsu ST
Chou MT
P2860cites workNMR structure of the chimeric hybrid duplex r(gcaguggc).r(gcca)d(CTGC) comprising the tRNA-DNA junction formed during initiation of HIV-1 reverse transcriptionQ27618403
Crystal structure of an Okazaki fragment at 2-A resolutionQ27642111
NMR analysis of helix I from the 5S RNA of Escherichia coliQ27642112
Solution structure of [d(GCGTATACGC)]2Q27642180
Relaxation matrix refinement of the solution structure of squash trypsin inhibitorQ27662075
Molecular structure of r(GCG)d(TATACGC): a DNA--RNA hybrid helix joined to double helical DNAQ27729126
A single 2'-hydroxyl group converts B-DNA to A-DNA. Crystal structure of the DNA-RNA chimeric decamer duplex d(CCGGC)r(G)d(CCGG) with a novel intermolecular G-C base-paired quadrupletQ27729348
Conformational influence of the ribose 2'-hydroxyl group: Crystal structures of DNA-RNA chimeric duplexesQ27729906
Structure and dynamics of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety: NMR and molecular dynamics with conventional and time-averaged restraintsQ27730056
Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairingQ27730320
DNA duplexes flanked by hybrid duplexes: the solution structure of chimeric junctions in [r(cgcg)d(TATACGCG)]2Q27730371
High-resolution NMR studies of chimeric DNA-RNA-DNA duplexes, heteronomous base pairing, and continuous base stacking at junctions.Q64890134
Determination of nucleic acid backbone conformation by 1H NMRQ67534462
Thermodynamic and structural properties of pentamer DNA.DNA, RNA.RNA, and DNA.RNA duplexes of identical sequenceQ68030509
Protein hydration in aqueous solutionQ68053669
DNA-RNA hybrid secondary structuresQ68969150
Solid-phase synthesis and high-resolution NMR studies of two synthetic double-helical RNA dodecamers: r(CGCGAAUUCGCG) and r(CGCGUAUACGCG)Q69074654
Assignment of the non-exchangeable proton resonances of d(C-G-C-G-A-A-T-T-C-G-C-G) using two-dimensional nuclear magnetic resonance methodsQ70181047
Comparison of the thermodynamic stabilities and solution conformations of DNA.RNA hybrids containing purine-rich and pyrimidine-rich strands with DNA and RNA duplexesQ71571731
Sequence specific thermodynamic and structural properties for DNA.RNA duplexesQ71621842
Sequence-dependent conformational heterogeneity of a hybrid DNA.RNA dodecamer duplexQ71630852
NMR assignments and solution conformation of the DNA · RNA hybrid duplex d(GTGAACTT) · r(AAGUUCAC)Q72089901
Thermodynamic stability and solution conformation of tandem G.A mismatches in RNA and RNA.DNA hybrid duplexesQ72330012
Sugar conformations at hybrid duplex junctions in HIV-1 and Okazaki fragmentsQ72941223
Rules governing the orientation of the 2'-hydroxyl group in RNAQ73940860
Hybrid oligomer duplexes formed with phosphorothioate DNAs: CD spectra and melting temperatures of S-DNA.RNA hybrids are sequence-dependent but consistent with similar heteronomous conformationsQ74023814
The solution structure of the r(gcg)d(TATACCC):d(GGGTATACGC) Okazaki fragment contains two distinct duplex morphologies connected by a junctionQ27730861
Structure of a DNA:RNA hybrid duplex. Why RNase H does not cleave pure RNAQ27732063
Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC)Q27732856
Structure of chimeric duplex junctions: solution conformation of the retroviral Okazaki-like fragment r(ccca)d(AATGA).d(TCATTTGGG) from Moloney murine leukemia virusQ27733129
RNA hydration: a detailed lookQ27733132
Structural variation among retroviral primer-DNA junctions: solution structure of the HIV-1 (-)-strand Okazaki fragment r(gcca)d(CTGC).d(GCAGTGGC)Q27733320
Solution structure of an RNA.2'-O-methylated RNA hybrid duplex containing an RNA.DNA hybrid segment at the centerQ27734917
Solution structure of an RNA x DNA hybrid duplex containing a 3'-thioformacetal linker and an RNA A-tractQ27735694
Conformational properties and thermodynamics of the RNA duplex r(CGCAAAUUUGCG)2: comparison with the DNA analogue d(CGCAAATTTGCG)2Q27739012
Solution structure of r(gaggacug):d(CAGTCCTC) hybrid: implications for the initiation of HIV-1 (+)-strand synthesisQ27739404
Solution structures of DNA.RNA hybrids with purine-rich and pyrimidine-rich strands: comparison with the homologous DNA and RNA duplexesQ27748773
Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutionsQ27860828
Defining the structure of irregular nucleic acids: conventions and principlesQ29620953
NMR observation of individual molecules of hydration water bound to DNA duplexes: direct evidence for a spine of hydration water present in aqueous solutionQ30894628
Water molecules in DNA recognition I: hydration lifetimes of trp operator DNA in solution measured by NMR spectroscopy.Q32019530
The orientation and dynamics of the C2'-OH and hydration of RNA and DNA.RNA hybridsQ32060910
Discontinuous DNA replicationQ34251800
The DNA strand in DNA.cntdot.RNA hybrid duplexes is neither B-form nor A-form in solutionQ34306047
Molecular structure of the B-DNA dodecamer d(CGCAAATTTGCG)2. An examination of propeller twist and minor-groove water structure at 2.2 A resolutionQ34324882
Hydration of the RNA duplex r(CGCAAAUUUGCG)2 determined by NMR.Q34612499
Large scale chemical synthesis, purification and crystallization of RNA-DNA chimerasQ35938908
CD of homopolymer DNA-RNA hybrid duplexes and triplexes containing A-T or A-U base pairsQ36146372
Conformational analysis of a hybrid DNA-RNA double helical oligonucleotide in aqueous solution: d(CG)r(CG)d(CG) studied by 1D- and 2D-1H NMR spectroscopyQ36586546
The search for structure-specific nucleic acid-interactive drugs: Effects of compound structure on RNA versus DNA interaction strengthQ36695632
The solution structure of a 3'-phenazinium (Pzn) tethered DNA-RNA duplex with a dangling adenosine: r(5'G-AUUGAA3'):d(5'TCAATC3'-Pzn)Q36714021
Hydration of DNA in aqueous solution: NMR evidence for a kinetic destabilization of the minor groove hydration of d-(TTAA)2 versus d-(AATT)2 segmentsQ36734739
Minor groove hydration of DNA in aqueous solution: sequence-dependent next neighbor effect of the hydration lifetimes in d(TTAA)2 segments measured by NMR spectroscopyQ36814133
Hydration and solution structure of d(CGCAAATTTGCG)2 and its complex with propamidine from NMR and molecular modellingQ36848231
Conformation of formacetal and 3'-thioformacetal nucleotide linkers and stability of their antisense RNA.DNA hybrid duplexesQ38349303
Deoxyribonucleotide-containing RNAs: a novel class of templates for HIV-1 reverse transcriptaseQ39721728
Targeting the minor groove of DNA.Q41515793
High-resolution NMR of an antisense DNA x RNA hybrid containing alternating chirally pure Rp methylphosphonates in the DNA backboneQ43513513
Proton exchange and base-pair kinetics of poly(rA).poly(rU) and poly(rI).poly(rC).Q44019922
Kinetic analysis of Escherichia coli RNase H using DNA-RNA-DNA/DNA substratesQ44996429
Structural study of a DNA.RNA hybrid duplex with a chiral phosphorothioate moiety by NMR: extraction of distance and torsion angle constraints and imino proton exchange ratesQ46501820
Structural influence of RNA incorporation in DNA: Quantitative nuclear magnetic resonance refinement of d(CG)r(CG)d(CG) and d(CG)r(C)d(TAGCG)Q52396068
P433issue6
P407language of work or nameEnglishQ1860
P921main subjectsolution structureQ99235426
P304page(s)1322-1331
P577publication date2000-03-01
P1433published inNucleic Acids ResearchQ135122
P1476titleThe solution structure of [d(CGC)r(aaa)d(TTTGCG)](2): hybrid junctions flanked by DNA duplexes
P478volume28

Reverse relations

cites work (P2860)
Q39516215RNase H mediated cleavage of RNA by cyclohexene nucleic acid (CeNA).
Q27635939Solution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids
Q27637131The solution structure of [d(CGC)r(amamam)d(TTTGCG)]2

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