| scholarly article | Q13442814 |
| P2093 | author name string | Darlu P | |
| Denamur E | |||
| Lecointre G | |||
| Rachdi L | |||
| P433 | issue | 12 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| molecular phylogenetics | Q2007033 | ||
| phylogenetics | Q171184 | ||
| P304 | page(s) | 1685-1695 | |
| P577 | publication date | 1998-12-01 | |
| P1433 | published in | Molecular Biology and Evolution | Q1992656 |
| P1476 | title | Escherichia coli molecular phylogeny using the incongruence length difference test | |
| P478 | volume | 15 |
| Q90091525 | A highly conserved complete accessory Escherichia coli type III secretion system 2 is widespread in bloodstream isolates of the ST69 lineage |
| Q37232696 | A metabolic operon in extraintestinal pathogenic Escherichia coli promotes fitness under stressful conditions and invasion of eukaryotic cells |
| Q36207761 | A new drug design strategy: Killing drug resistant bacteria by deactivating their hypothetical genes |
| Q37057250 | Alignment-free microbial phylogenomics under scenarios of sequence divergence, genome rearrangement and lateral genetic transfer |
| Q33979706 | Antibiotic resistance in the ECOR collection: integrons and identification of a novel aad gene |
| Q46021290 | Antimicrobial resistance in relation to virulence determinants and phylogenetic background among uropathogenic Escherichia coli in Lebanon. |
| Q51686878 | Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method. |
| Q34231661 | Association of virulence genotype with phylogenetic background in comparison to different seropathotypes of Shiga toxin-producing Escherichia coli isolates |
| Q39467461 | Automated ribotyping provides rapid phylogenetic subgroup affiliation of clinical extraintestinal pathogenic Escherichia coli strains |
| Q42288193 | Autotransporter-encoding sequences are phylogenetically distributed among Escherichia coli clinical isolates and reference strains. |
| Q41894905 | CRISPR distribution within the Escherichia coli species is not suggestive of immunity-associated diversifying selection. |
| Q39470042 | Characteristics of human intestinal Escherichia coli with changing environments |
| Q35075631 | Characterization of Stg fimbriae from an avian pathogenic Escherichia coli O78:K80 strain and assessment of their contribution to colonization of the chicken respiratory tract. |
| Q40762680 | Characterization of an anonymous molecular marker strongly linked to Escherichia coli strains causing neonatal meningitis |
| Q37263825 | Characterization of fecal extended-spectrum-β-lactamase-producing Escherichia coli in a remote community during a long time period |
| Q42736077 | Clonal origin, virulence factors, and virulence |
| Q34054385 | Combined ribotyping and random multiprimer DNA analysis to probe the population structure of Listeria monocytogenes |
| Q42320292 | Comparative Analysis of Phylogenetic Assignment of Human and Avian ExPEC and Fecal Commensal Escherichia coli Using the (Previous and Revised) Clermont Phylogenetic Typing Methods and its Impact on Avian Pathogenic Escherichia coli (APEC) Classifica |
| Q88537978 | Comparative analyses of whole-genome protein sequences from multiple organisms |
| Q39461303 | Comparative prevalence of Escherichia coli carrying virulence genes and class 1 and 2 integrons in sub-tropical and cool temperate freshwater. |
| Q41823804 | Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69. |
| Q38836150 | Day-to-Day Dynamics of Commensal Escherichia coli in Zimbabwean Cows Evidence Temporal Fluctuations within a Host-Specific Population Structure. |
| Q54509542 | Decreasing the effects of horizontal gene transfer on bacterial phylogeny: the Escherichia coli case study. |
| Q24792899 | Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement |
| Q51985135 | Detecting phylogenetic incongruence using BIONJ: an improvement of the ILD test. |
| Q24794583 | Detection and characterization of horizontal transfers in prokaryotes using genomic signature |
| Q50108488 | Detection of recombination among Salmonella enterica strains using the incongruence length difference test |
| Q36158453 | Effects of selection pressure and genetic association on the relationship between antibiotic resistance and virulence in Escherichia coli |
| Q54333071 | Escherichia coli isolates from extraintestinal organs of livestock animals harbour diverse virulence genes and belong to multiple genetic lineages. |
| Q33591810 | Escherichia coli phylogenetic group determination and its application in the identification of the major animal source of fecal contamination. |
| Q47846602 | Evidence for genetic exchange and hybridization in Trypanosoma cruzi based on nucleotide sequences and molecular karyotype |
| Q40388521 | Evolutionary dynamics of full genome content in Escherichia coli |
| Q50117948 | Evolutionary implications of the frequent horizontal transfer of mismatch repair genes |
| Q47789784 | Extended-spectrum β-lactamase-producing Escherichia coli in wastewaters and refugee camp in Lebanon |
| Q38352122 | Feasibility of mini-sequencing schemes based on nucleotide polymorphisms for microbial identification and population analyses. |
| Q42732246 | Genetic diversity within E.coli |
| Q39482864 | Genetic structure of natural populations of Escherichia coli in wild hosts on different continents |
| Q34198709 | Global molecular epidemiology of the O15:K52:H1 extraintestinal pathogenic Escherichia coli clonal group: evidence of distribution beyond Europe |
| Q35898909 | H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes. |
| Q30729891 | Improved repetitive-element PCR fingerprinting for resolving pathogenic and nonpathogenic phylogenetic groups within Escherichia coli |
| Q41089940 | Investigation of horizontal gene transfer of pathogenicity islands in Escherichia coli using next-generation sequencing. |
| Q35102631 | Isolation and molecular characterization of nalidixic acid-resistant extraintestinal pathogenic Escherichia coli from retail chicken products |
| Q33836575 | Large genomic sequence repetitions in bacteria: lessons from rRNA operons and Rhs elements |
| Q35049379 | Large-scale genomic sequencing of extraintestinal pathogenic Escherichia coli strains |
| Q36999765 | Microcin determinants are associated with B2 phylogroup of human fecal Escherichia coli isolates |
| Q33716983 | Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections |
| Q58762159 | Molecular characterization of Carbapenem resistant Escherichia coli recovered from a tertiary hospital in Lebanon |
| Q34004495 | Molecular epidemiological and phylogenetic associations of two novel putative virulence genes, iha and iroN(E. coli), among Escherichia coli isolates from patients with urosepsis |
| Q44765417 | Molecular phylogenies support multiple morphological reductions in the liverwort subclass Marchantiidae (Bryophyta). |
| Q28728697 | No evidence for transmission of antibiotic-resistant Escherichia coli strains from humans to wild western lowland gorillas in Lopé National Park, Gabon |
| Q33943883 | Obscured phylogeny and possible recombinational dormancy in Escherichia coli |
| Q34008836 | Ongoing horizontal and vertical transmission of virulence genes and papA alleles among Escherichia coli blood isolates from patients with diverse-source bacteremia |
| Q47678988 | Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins. |
| Q21090212 | Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths |
| Q36828072 | Pathotypic and Phylogenetic Study of Diarrheagenic Escherichia coli and Uropathogenic E. coli Using Multiplex Polymerase Chain Reaction. |
| Q33387416 | Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains |
| Q35221065 | Phylogenetic comparisons reveal multiple acquisitions of the toxin genes by enterotoxigenic Escherichia coli strains of different evolutionary lineages |
| Q39502754 | Phylogenetic evidence for horizontal transfer of mutS alleles among naturally occurring Escherichia coli strains |
| Q43522975 | Phylogenetic group-associated differences in regulation of the common colonization factor Mat fimbria in Escherichia coli |
| Q40744317 | Phylogeny and strain typing of Escherichia coli, inferred from variation at mononucleotide repeat loci |
| Q28215349 | Phylogeny of Antarctic dragonfishes (Bathydraconidae, Notothenioidei, Teleostei) and related families based on their anatomy and two mitochondrial genes |
| Q33919655 | Rapid and simple determination of the Escherichia coli phylogenetic group |
| Q35635403 | Reassortment and concerted evolution in banana bunchy top virus genomes |
| Q33398511 | Role of intraspecies recombination in the spread of pathogenicity islands within the Escherichia coli species |
| Q33780703 | Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species |
| Q44563985 | Serotypes and virulence genes of extraintestinal pathogenic Escherichia coli isolates from diseased pigs in China |
| Q28768050 | Sex and virulence in Escherichia coli: an evolutionary perspective |
| Q42932042 | Single-nucleotide polymorphism phylotyping of Escherichia coli |
| Q39116648 | Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. |
| Q34148431 | The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition |
| Q47439229 | The Evolutionary History of Shigella and Enteroinvasive Escherichia coli Revised |
| Q54943918 | The Impact of Media, Phylogenetic Classification, and E. coli Pathotypes on Biofilm Formation in Extraintestinal and Commensal E. coli From Humans and Animals. |
| Q35137906 | The decoupling between genetic structure and metabolic phenotypes in Escherichia coli leads to continuous phenotypic diversity |
| Q34000162 | The link between phylogeny and virulence in Escherichia coli extraintestinal infection |
| Q46129337 | The microsatellites of Escherichia coli: rapidly evolving repetitive DNAs in a non-pathogenic prokaryote |
| Q37692844 | The population genetics of commensal Escherichia coli |
| Q37109660 | The type 1 pili regulator gene fimX and pathogenicity island PAI-X as molecular markers of uropathogenic Escherichia coli |
| Q44188624 | The yicJI metabolic operon of Escherichia coli is involved in bacterial fitness |
| Q34464882 | Three R's of bacterial evolution: how replication, repair, and recombination frame the origin of species |
| Q34126684 | Type II heat-labile enterotoxins from 50 diverse Escherichia coli isolates belong almost exclusively to the LT-IIc family and may be prophage encoded |
| Q33995424 | Vertical transmission of biosynthetic plasmids in aphid endosymbionts (Buchnera). |
| Q33540341 | Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus |
| Q24631563 | Whole-genome phylogeny of Escherichia coli/Shigella group by feature frequency profiles (FFPs) |
| Q35931536 | Whole-genome sequencing of uropathogenic Escherichia coli reveals long evolutionary history of diversity and virulence |
| Q34130273 | Yersinia high-pathogenicity island contributes to virulence in Escherichia coli causing extraintestinal infections |
| Q74584926 | [Virulence factors associated with E. coli neonatal meningitis] |
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