Critical factors for assembling a high volume of DNA barcodes

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Critical factors for assembling a high volume of DNA barcodes is …
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scholarly articleQ13442814

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P356DOI10.1098/RSTB.2005.1727
P932PMC publication ID1609220
P698PubMed publication ID16214753
P5875ResearchGate publication ID7550637

P50authorPaul D. N. HebertQ7150099
Jeremy R. deWaardQ52401352
Sujeevan RatnasinghamQ91987432
Robert T DoohQ117226595
Mehrdad HajibabaeiQ23008858
P2093author name stringStephanie L Kirk
Natalia V Ivanova
Paula M Mackie
P2860cites workFactors affecting quantitation of DNA bands in gels using a charge-coupled device imaging systemQ43595111
Trehalose is a potent PCR enhancer: lowering of DNA melting temperature and thermal stabilization of taq polymerase by the disaccharide trehaloseQ44960215
Taxonomy. Will DNA bar codes breathe life into classification?Q48711869
Primers for a PCR-Based Approach to Mitochondrial Genome Sequencing in Birds and Other VertebratesQ58311560
Identification of Birds through DNA BarcodesQ21146401
Instability and decay of the primary structure of DNAQ22122361
Use of DNA barcodes to identify flowering plantsQ24529100
PCR fidelity of pfu DNA polymerase and other thermostable DNA polymerasesQ24548129
Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgeratorQ24563732
Biological identifications through DNA barcodesQ24669741
Basic local alignment search toolQ25938991
The neighbor-joining method: a new method for reconstructing phylogenetic treesQ25939010
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymeraseQ26778389
Base-calling of automated sequencer traces using phred. I. Accuracy assessmentQ27860665
Primer3 on the WWW for general users and for biologist programmersQ27861030
Methods for the recovery of mitochondrial DNA sequences from museum specimens of myiasis-causing fliesQ28215241
Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic materialQ28289686
Effects of amplification facilitators on diagnostic PCR in the presence of blood, feces, and meatQ28344989
Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcodingQ28767119
DNA barcoding Australia's fish speciesQ29614733
Rapid and simple method for purification of nucleic acidsQ29615124
Mitochondrial pseudogenes: evolution's misplaced witnessesQ29616343
Phylogenetic study of complete cytochrome b genes in musk deer (genus Moschus) using museum samplesQ30739034
Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimensQ31145781
Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimensQ33203063
The expansion of conservation geneticsQ33206900
DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of MadagascarQ33224898
Land plants and DNA barcodes: short-term and long-term goalsQ33224900
Enzymatic repair of selected cross-linked homoduplex molecules enhances nuclear gene rescue from Pompeii and Herculaneum remainsQ33560924
CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer designQ35207595
Use of inosine-containing oligonucleotide primers for enzymatic amplification of different alleles of the gene coding for heat-stable toxin type I of enterotoxigenic Escherichia coliQ35688772
Damage and repair of ancient DNA.Q36062343
Molecular preservationQ36535600
P433issue1462
P407language of work or nameEnglishQ1860
P304page(s)1959-1967
P577publication date2005-10-01
P1433published inPhilosophical Transactions of the Royal Society BQ2153239
P1476titleCritical factors for assembling a high volume of DNA barcodes
P478volume360

Reverse relations

cites work (P2860)
Q28679234A DNA 'barcode blitz': rapid digitization and sequencing of a natural history collection
Q28822059A DNA Barcode Library for North American Pyraustinae (Lepidoptera: Pyraloidea: Crambidae)
Q35826909A DNA Mini-Barcoding System for Authentication of Processed Fish Products
Q90176943A Guide to Carrying Out a Phylogenomic Target Sequence Capture Project
Q28597954A Multi-Species TaqMan PCR Assay for the Identification of Asian Gypsy Moths (Lymantria spp.) and Other Invasive Lymantriines of Biosecurity Concern to North America
Q39262324A comparison of DNA extraction methods for high-throughput DNA analyses
Q33862479A comprehensive DNA barcode library for the looper moths (Lepidoptera: Geometridae) of British Columbia, Canada
Q26745821A comprehensive view of the web-resources related to sericulture
Q70104474A molecular study of Neophyllaphis varicolor (Hemiptera, Aphididae) in Costa Rica
Q47096632A new butterfly species from south Russia revealed through chromosomal and molecular analysis of the Polyommatus (Agrodiaetus) damonides complex (Lepidoptera, Lycaenidae).
Q34781927A new set of primers for COI amplification from freshwater microcrustaceans
Q41149389A new species of Melitaea from Israel, with notes on taxonomy, cytogenetics, phylogeography and interspecific hybridization in the Melitaea persea complex (Lepidoptera, Nymphalidae).
Q22676334A pioneer survey and DNA barcoding of some commonly found gastropod molluscs on Robben Island
Q58000027A review of over a decade of DNA barcoding in South Africa: a faunal perspective
Q36663525A revision of Malagasy species of Anochetus mayr and Odontomachus latreille (Hymenoptera: Formicidae)
Q46262190A streamlined collecting and preparation protocol for DNA barcoding of Lepidoptera as part of large-scale rapid biodiversity assessment projects, exemplified by the Indonesian Biodiversity Discovery and Information System (IndoBioSys).
Q35131470A transcontinental challenge--a test of DNA barcode performance for 1,541 species of Canadian Noctuoidea (Lepidoptera)
Q37901872Advances in DNA-based techniques for the detection of seafood species substitution on the commercial market
Q34596632Advancing nematode barcoding: a primer cocktail for the cytochrome c oxidase subunit I gene from vertebrate parasitic nematodes
Q30742563An example of how barcodes can clarify cryptic species: the case of the calanoid copepod Mastigodiaptomus albuquerquensis (Herrick)
Q46890688Application of COI barcode sequence for the identification of snake medicine (Zaocys).
Q46789051Are mini DNA-barcodes sufficiently informative to resolve species identities? An in silico analysis using Phyllanthus
Q30532034Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol
Q48052410Assessing the potential of candidate DNA barcodes for identifying non-flowering seed plants
Q33580140Assessing the value of DNA barcodes and other priority gene regions for molecular phylogenetics of Lepidoptera.
Q58653546Atypical Wing Venation in Dialictus and Hemihalictus and Its Implications for Subgeneric Classification of Lasioglossum
Q36030343Authentication of Herbal Supplements Using Next-Generation Sequencing
Q27860883BARCODING: bold: The Barcode of Life Data System (http://www.barcodinglife.org)
Q33883751Barcoding bugs: DNA-based identification of the true bugs (Insecta: Hemiptera: Heteroptera)
Q34339614Barcoding sponges: an overview based on comprehensive sampling
Q35013537Barcoding the Collembola of Churchill: a molecular taxonomic reassessment of species diversity in a sub-Arctic area
Q57227387Biogeography, ecology and conservation ofErebia oeme(Hübner) in the Carpathians (Lepidoptera: Nymphalidae: Satyrinae)
Q56983555Biological identifications through DNA barcodes: the case of the Crustacea
Q56512874Biological invasions in soil: DNA barcoding as a monitoring tool in a multiple taxa survey targeting European earthworms and springtails in North America
Q73817493Brachionus paranguensis sp. nov. (Rotifera, Monogononta), a member of the L group of the Brachionus 23. plicatilis complex
Q30599578Can DNA barcoding accurately discriminate megadiverse Neotropical freshwater fish fauna?
Q21191517Chaetopteryx bucari sp. n., a new species from the Chaetopteryx rugulosa group from Croatia (Insecta, Trichoptera, Limnephilidae) with molecular, taxonomic and ecological notes on the group
Q34028998Chelex without boiling, a rapid and easy technique to obtain stable amplifiable DNA from small amounts of ethanol-stored spiders.
Q106699880Chromosomal and DNA barcode analysis of the Polyommatus (Agrodiaetus) damone (Eversmann, 1841) species complex (Lepidoptera, Lycaenidae)
Q123463193Clarifying the taxonomic status and exploring hidden diversity in Graphomya minor Robineau-Desvoidy, 1830 (Diptera: Muscidae: Mydaeinae) using molecular and morphological evidence
Q57114607Climate variability predicts thermal limits of aquatic insects across elevation and latitude
Q111629247Comparison of four DNA barcodes in identifying certain medicinal plants of Lamiaceae
Q55981119Comprehensive DNA barcode coverage of North American birds
Q33368610Comprehensive DNA barcode coverage of North American birds
Q34438632Cryptic diversity in the ubiquist species Parisotoma notabilis (Collembola, Isotomidae): a long-used chimeric species?
Q51283792Cryptic species diversity reveals biogeographic support for the 'mountain passes are higher in the tropics' hypothesis.
Q37628677Current status and future perspectives on molecular and serological methods in diagnostic mycology
Q33506622DNA BARCODING IN LAND PLANTS: DEVELOPING STANDARDS TO QUANTIFY AND MAXIMIZE SUCCESS.
Q28830180DNA Barcoding of Birds at a Migratory Hotspot in Eastern Turkey Highlights Continental Phylogeographic Relationships
Q46551293DNA Mini-barcoding for wildlife trade control: a case study on identification of highly processed animal materials
Q34809857DNA barcodes and molecular diagnostics for distinguishing introduced Xyleborus (Coleoptera: Scolytinae) species in China
Q54601399DNA barcodes as a tool in biodiversity research: testing pre-existing taxonomic hypotheses in Delphic Apollo butterflies (Lepidoptera, Papilionidae)
Q33805177DNA barcodes discriminate freshwater fishes from the Paraíba do Sul River Basin, São Paulo, Brazil.
Q29616339DNA barcodes distinguish species of tropical Lepidoptera
Q34408861DNA barcodes identify marine fishes of São Paulo State, Brazil
Q24541376DNA barcodes reveal cryptic host-specificity within the presumed polyphagous members of a genus of parasitoid flies (Diptera: Tachinidae)
Q29614733DNA barcoding Australia's fish species
Q46296150DNA barcoding a nightmare taxon: assessing barcode index numbers and barcode gaps for sweat bees
Q30591317DNA barcoding facilitates associations and diagnoses for Trichoptera larvae of the Churchill (Manitoba, Canada) area
Q33394823DNA barcoding for ecologists
Q33224898DNA barcoding for effective biodiversity assessment of a hyperdiverse arthropod group: the ants of Madagascar
Q29353923DNA barcoding in surveys of small mammal communities: a field study in Suriname
Q56983572DNA barcoding of Neotropical bats: species identification and discovery within Guyana
Q64230726DNA barcoding of flowering plants in Sumatra, Indonesia
Q30592787DNA barcoding of freshwater rotifera in Mexico: evidence of cryptic speciation in common rotifers
Q90123716DNA barcoding of southern African crustaceans reveals a mix of invasive species and potential cryptic diversity
Q33785822DNA barcoding reveals cryptic diversity in Lumbricus terrestris L., 1758 (Clitellata): resurrection of L. herculeus (Savigny, 1826).
Q89868758DNA barcoding reveals incorrect labelling of insects sold as food in the UK
Q31094241DNA barcoding reveals species composition of sharks and rays in the Indian commercial fishery
Q24652786DNA barcoding the floras of biodiversity hotspots
Q46373099DNA extraction techniques for DNA barcoding of minute gall-inhabiting wasps
Q55051112Daphnia diversity on the Tibetan Plateau measured by DNA taxonomy.
Q33941559Deep barcode divergence in Brazilian freshwater fishes: the case of the São Francisco River basin.
Q36227151Detecting invertebrate species in archived collections using next-generation sequencing.
Q90616597Dynamics of a host-parasitoid interaction clarified by modelling and DNA sequencing
Q91791786Efficacy of metabarcoding for identification of fish eggs evaluated with mock communities
Q33886933Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos
Q47291971Evolution of host specialization in the Adelgidae (Insecta: Hemiptera) inferred from molecular phylogenetics.
Q57297219Experimental Infection and Transmission Competence of Sindbis Virus in Culex torrentium and Culex pipiens Mosquitoes from Northern Sweden
Q33902896Extracting DNA from museum bird eggs, and whole genome amplification of archive DNA.
Q64120520Extracting the invisible: obtaining high quality DNA is a challenging task in small arthropods
Q35918189Fast Census of Moth Diversity in the Neotropics: A Comparison of Field-Assigned Morphospecies and DNA Barcoding in Tiger Moths
Q40242283Forensically informative nucleotide sequencing (FINS) for the authentication of Chinese medicinal materials
Q55311837From field courses to DNA barcoding data release for West Papua - making specimens and identifications from university courses more sustainable.
Q35583752From the field to the lab: best practices for field preservation of bat specimens for molecular analyses.
Q51633638Genetic differentiation of ezo brown frog (Rana pirica matsui, 1991) (anura: Ranidae) on Pacific islands.
Q35595315Genetic evaluation of the evolutionary distinctness of a federally endangered butterfly, Lange's Metalmark
Q33805204Genetic variation in avocado stem weevils Copturus aguacatae (Coleoptera: Curculionidae) in Mexico
Q35150529Geographic variation of melanisation patterns in a hornet species: genetic differences, climatic pressures or aposematic constraints?
Q41677476Hidden biodiversity in entomological collections: The overlooked co-occurrence of dipteran and hymenopteran ant parasitoids in stored biological material
Q46262724How many species and under what names? Using DNA barcoding and GenBank data for west Central African amphibian conservation
Q35940480Hybridization relics complicate barcode-based identification of species in earthworms.
Q34197855Identifying Canadian freshwater fishes through DNA barcodes
Q51147863Improved protocols to accelerate the assembly of DNA barcode reference libraries for freshwater zooplankton.
Q89868659Improving sustainable use of genetic resources in biodiversity archives
Q35258470Influence of killing method on Lepidoptera DNA barcode recovery
Q36470473Inquiry-based experiments for large-scale introduction to PCR and restriction enzyme digests
Q22675501Interpretation of mitochondrial diversity in terms of taxonomy: a case study of Hyponephele lycaon species complex in Israel (Lepidoptera, Nymphalidae, Satyrinae)
Q33517888Invasions, DNA barcodes, and rapid biodiversity assessment using ants of Mauritius
Q58842007Investigating the molecular systematic relationships amongst selectedPlesionika(Decapoda: Pandalidae) from the Northeast Atlantic and Mediterranean Sea
Q58171654Korea Barcode of Life Database System (KBOL)
Q57027535Large herbivores favour species diversity but have mixed impacts on phylogenetic community structure in an African savanna ecosystem
Q36245983Level of environmental threat posed by horticultural trade in Cactaceae
Q92317680Linking karyotypes with DNA barcodes: proposal for a new standard in chromosomal analysis with an example based on the study of Neotropical Nymphalidae (Lepidoptera)
Q24675011Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon
Q91698989Metabarcoding a diverse arthropod mock community
Q35289939Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies.
Q21192774Mitochondrial heteroplasmy and DNA barcoding in Hawaiian Hylaeus (Nesoprosopis) bees (Hymenoptera: Colletidae).
Q45994053Molecular Tools for the Detection and the Identification of Hymenoptera Parasitoids in Tortricid Fruit Pests.
Q111348247Molecular identification and first documentation of seven species of Carpophilus Stephens (Nitidulidae: Carpophilinae) in oil palm ecosystem, Peninsular Malaysia
Q111346762Molecular identification and larval description of Callipogon relictus Semenov (Coleoptera: Cerambycidae), a natural monument of South Korea
Q56349753Molecular identification of polydorid polychaetes (Annelida: Spionidae): is there a quick way to identify pest and alien species?
Q54567886Molecular systematics and phylogeny of the ‘Marbled Whites' (Lepidoptera: Nymphalidae, Satyrinae,MelanargiaMeigen)
Q34459798Molecular-based rapid inventories of sympatric diversity: a comparison of DNA barcode clustering methods applied to geography-based vs clade-based sampling of amphibians
Q34295533Monitoring an alien invasion: DNA barcoding and the identification of lionfish and their prey on coral reefs of the Mexican Caribbean
Q38034541Multi-locus species delimitation in closely related animals and fungi: one marker is not enough
Q28741659Multigene molecular systematics confirm species status of morphologically convergent Pagurus hermit crabs
Q58612158Narrow thermal tolerance and low dispersal drive higher speciation in tropical mountains
Q90205975New Syrphidae (Diptera) of North-eastern North America
Q22678306New earthworm species of the genus Amynthas Kinberg, 1867 from Thailand (Clitellata, Oligochaeta, Megascolecidae)
Q35505073New primers for DNA barcoding of digeneans and cestodes (Platyhelminthes).
Q54579416New species in the Lasioglossum petrellum species group identified through an integrative taxonomic approach
Q106699763New species of Stenomacrus (Hymenoptera: Ichneumonidae: Orthocentrinae) reared from Bradysia impatiens (Diptera: Sciaridae) in The Netherlands
Q111742513New taxonomic notes on the genus Coenosia Meigen (Diptera: Muscidae), with the description of four new species from North-East Russia and the Altai Mountains
Q34119597New taxonomy and old collections: integrating DNA barcoding into the collection curation process
Q98564835Next generation sequencing-aided comprehensive geographic coverage sheds light on the status of rare and extinct populations of Aporia butterflies (Lepidoptera: Pieridae)
Q35123526Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens
Q34670345Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.
Q54519885Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes)
Q45900325Phylogeny and DNA barcoding of inquiline oak gallwasps (Hymenoptera: Cynipidae) of the Western Palaearctic.
Q28742557Potential efficacy of mitochondrial genes for animal DNA barcoding: a case study using eutherian mammals
Q33317569Potential use of DNA barcodes in regulatory science: applications of the Regulatory Fish Encyclopedia
Q54801485Preliminary molecular phylogeny and biogeography of the monobasic subfamily Calinaginae (Lepidoptera, Nymphalidae)
Q33751858Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America
Q33278671Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case.
Q34780372Protocols for dry DNA storage and shipment at room temperature
Q30878322Rapid DNA barcoding analysis of large datasets using the composition vector method
Q56898245Rapid and accurate taxonomic classification of insect (class Insecta) cytochromecoxidase subunit 1 (COI) DNA barcode sequences using a naïve Bayesian classifier
Q52576237Re-evaluation of the discriminatory power of DNA barcoding on some specimens of African Cyprinidae (subfamilies Cyprininae and Danioninae).
Q56431247Reconstructing the invasion and the demographic history of the yellow-legged hornet, Vespa velutina, in Europe
Q22678634Reestablishment of Notopygos megalops McIntosh, description of N. caribea sp. n. from the Greater Caribbean and barcoding of "amphiamerican" Notopygos species (Annelida, Amphinomidae)
Q34569438Restricted variation in plant barcoding markers limits identification in closely related bryophyte species
Q104458593Review of New World Sericomyia (Diptera: Syrphidae), including description of a new species
Q21185329Revision of the Lacinipolia vicina (Grote) complex (Noctuidae, Noctuinae, Eriopygini)
Q104453747Revision of the endemic New Zealand braconid wasp genus Metaspathius: new subfamily placement, and descriptions of four new species including three with fully winged females (Hymenoptera: Braconidae: Mesostoinae)
Q94544090Revision of the western Palaearctic species of Aleiodes Wesmael (Hymenoptera, Braconidae, Rogadinae). Part 2: Revision of the A. apicalis group
Q64023983Revision of world Sphecomyia Latreille (Diptera, Syrphidae)
Q22679881Revisiting species delimitation within the genus Oxystele using DNA barcoding approach
Q34429793Savanna fire and the origins of the 'underground forests' of Africa
Q36111313Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens
Q35809250Services of DNA barcoding in different fields
Q28740291Systematic and evolutionary insights derived from mtDNA COI barcode diversity in the Decapoda (Crustacea: Malacostraca).
Q110444822Systematics and origin of moths in the subfamily Arctiinae (Lepidoptera, Erebidae) in the Neotropical region
Q35961704Taxonomic identification of algae (morphological and molecular): species concepts, methodologies, and their implications for ecological bioassessment
Q21090116Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective
Q55872115Taxonomic review of the leek moth genus Acrolepiopsis (Lepidoptera: Acrolepiidae) in North America
Q104454983Taxonomy and molecular phylogeny of the Neotropical genusAtlantoscia(Oniscidea, Philosciidae): DNA barcoding and description of two new species
Q36322344Ten years of barcoding at the African Centre for DNA Barcoding
Q21090293The centipede genus Eupolybothrus Verhoeff, 1907 (Chilopoda: Lithobiomorpha: Lithobiidae) in North Africa, a cybertaxonomic revision, with a key to all species in the genus and the first use of DNA barcoding for the group
Q28658002The changing epitome of species identification - DNA barcoding
Q35553385The hemiptera (insecta) of Canada: constructing a reference library of DNA barcodes
Q38450895The potential of distance-based thresholds and character-based DNA barcoding for defining problematic taxonomic entities by CO1 and ND1.
Q33691558The role of DNA barcodes in understanding and conservation of mammal diversity in southeast Asia
Q40641681The sequence divergence in cytochrome C oxidase I gene of Culex quinquefasciatus mosquito and its comparison with four other Culex species
Q33517879Towards a comprehensive barcode library for arctic life - Ephemeroptera, Plecoptera, and Trichoptera of Churchill, Manitoba, Canada.
Q33769069Towards a global barcode library for Lymantria (Lepidoptera: Lymantriinae) tussock moths of biosecurity concern
Q28767125Towards writing the encyclopedia of life: an introduction to DNA barcoding
Q35694430Trace DNA from insect skins: a comparison of five extraction protocols and direct PCR on chironomid pupal exuviae
Q56983436Tracing the origin of disjunct distributions: a case of biogeographical convergence in Pyrgus butterflies
Q61448673Two types of highly ordered micro- and macrochromosome arrangement in metaphase plates of butterflies (Lepidoptera)
Q34669514Ultra-deep sequencing enables high-fidelity recovery of biodiversity for bulk arthropod samples without PCR amplification.
Q56983595Universal primer cocktails for fish DNA barcoding
Q55188072Unusually low genetic divergence at COI barcode locus between two species of intertidal Thalassaphorura (Collembola: Onychiuridae).
Q92837474Using DNA Barcodes to Aid the Identification of Larval Fishes in Tropical Estuarine Waters (Malacca Straits, Malaysia)
Q28767119Wedding biodiversity inventory of a large and complex Lepidoptera fauna with DNA barcoding
Q21133021When the rule becomes the exception. no evidence of gene flow between two Zerynthia cryptic butterflies suggests the emergence of a new model group
Q110698105Taxonomic revision of Romaleosyrphus Bigot (Diptera, Syrphidae), including descriptions of seven new species