Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities

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Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1029969288
P356DOI10.1186/1471-2180-6-54
P932PMC publication ID1526739
P698PubMed publication ID16772028
P5875ResearchGate publication ID7011621

P2093author name stringMartina Hausner
Stephan Bathe
P2860cites workThe CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis toolsQ24248165
Bioaugmentation of activated sludge by an indigenous 3-chloroaniline-degrading Comamonas testosteroni strain, I2gfpQ24550513
Molecular analysis of isophthalate and terephthalate degradation by Comamonas testosteroni YZW-DQ24554403
The role of cell bioaugmentation and gene bioaugmentation in the remediation of co-contaminated soilsQ24812814
Degradative pathways for p-toluenecarboxylate and p-toluenesulfonate and their multicomponent oxygenases in Comamonas testosteroni strains PSB-4 and T-2Q28291432
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populationsQ29616751
Biofilm formation by Pseudomonas aeruginosa wild type, flagella and type IV pili mutantsQ30944663
Automated confocal laser scanning microscopy and semiautomated image processing for analysis of biofilmsQ31984822
Genetic diversity among 3-chloroaniline- and aniline-degrading strains of the ComamonadaceaeQ33989043
D-lysine production from L-lysine by successive chemical racemization and microbial asymmetric degradationQ34064689
Steroid degradation gene cluster of Comamonas testosteroni consisting of 18 putative genes from meta-cleavage enzyme gene tesB to regulator gene tesR.Q34357517
probeBase: an online resource for rRNA-targeted oligonucleotide probesQ35158030
Molecular cloning of novel genes for polycyclic aromatic hydrocarbon degradation from Comamonas testosteroni GZ39.Q35188244
Metabolism of 2,2'- and 3,3'-dihydroxybiphenyl by the biphenyl catabolic pathway of Comamonas testosteroni B-356Q35540088
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.Q39521881
A new bacterial steroid degradation gene cluster in Comamonas testosteroni TA441 which consists of aromatic-compound degradation genes for seco-steroids and 3-ketosteroid dehydrogenase genesQ39805103
Use of a simplified cell blot technique and 16S rRNA-directed probes for identification of common environmental isolates.Q39858900
Reconstitution of emulsifying activity of Acinetobacter calcoaceticus BD4 emulsan by using pure polysaccharide and protein.Q39924142
Use of 16S rRNA gene-targeted group-specific primers for real-time PCR analysis of predominant bacteria in human fecesQ40621217
Quantification of an Eikelboom type 021N bulking event with fluorescence in situ hybridization and real-time PCR.Q43320674
Plasmid-mediated bioaugmentation of activated sludge bacteria in a sequencing batch moving bed reactor using pNB2.Q43325927
Identification of a novel Comamonas testosteroni gene encoding a steroid-inducible extradiol dioxygenaseQ44022371
Genetic analysis of functions involved in the late stages of biofilm development in Burkholderia cepacia H111.Q44198142
Biodegradation of quinoline by freely suspended and immobilized cells of Comamonas sp strain Q10.Q44495903
Effect of integration of a GFP reporter gene on fitness of Ralstonia eutropha during growth with 2,4‐dichlorophenoxyacetic acidQ44597037
Conjugal transfer of plasmid pNB2 to activated sludge bacteria leads to 3-chloroaniline degradation in enrichment culturesQ44885881
High phylogenetic diversity of transconjugants carrying plasmid pJP4 in an activated sludge-derived microbial communityQ44926727
Ecological study of a bioaugmentation failure.Q51202888
Characterization of a 3 alpha-hydroxysteroid dehydrogenase/carbonyl reductase from the gram-negative bacterium Comamonas testosteroni.Q52551621
Enumeration of 16S rDNA of Desulfotomaculum lineage 1 in rice field soil by real-time PCR with SybrGreen detectionQ78068115
Development of a real-time PCR method for quantification of the three genera Dehalobacter, Dehalococcoides, and Desulfitobacterium in microbial communitiesQ80066978
P921main subjectComamonas testosteroniQ5150499
RNA designQ55213896
P304page(s)54
P577publication date2006-06-13
P1433published inBMC MicrobiologyQ15759430
P1476titleDesign and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities
P478volume6

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cites work (P2860)
Q37393580Draft Genome Sequence of the Bacterium Comamonas aquatica CJG
Q33413604Empirical testing of 16S rRNA gene PCR primer pairs reveals variance in target specificity and efficacy not suggested by in silico analysis
Q36162188Identification of Comamonas testosteroni as an androgen degrader in sewage
Q33637818Non-target sites with single nucleotide insertions or deletions are frequently found in 16S rRNA sequences and can lead to false positives in fluorescence in situ hybridization (FISH).
Q36483145Prevalence and abundance of uncultivated Megasphaera-like bacteria in the human vaginal environment
Q33827040Quantitative PCR assessments of bacterial species in women with and without bacterial vaginosis
Q33757559STITCH: Algorithm to Splice, Trim, Identify, Track, and Capture the Uniqueness of 16S rRNAs Sequence Pairs Using Public or In-house Database
Q54538742The role of biodegradation in limiting the accumulation of petroleum hydrocarbons in raingarden soils.

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