| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1033069099 |
| P356 | DOI | 10.1186/1471-2148-7-40 |
| P932 | PMC publication ID | 1853084 |
| P698 | PubMed publication ID | 17359539 |
| P5875 | ResearchGate publication ID | 6446772 |
| P50 | author | Benjamin D Redelings | Q95994335 |
| Marc A. Suchard | Q16214224 | ||
| P2860 | cites work | Insertion/deletion frequencies match those of point mutations in the hypervariable regions of the simian immunodeficiency virus surface envelope gene | Q45736877 |
| Long-term follow-up study of core gene deletion mutants in children with chronic hepatitis B virus infection. | Q45741840 | ||
| Incorporating information from length-mutational events into phylogenetic analysis. | Q51965355 | ||
| The order of sequence alignment can bias the selection of tree topology. | Q52449980 | ||
| A novel use of equilibrium frequencies in models of sequence evolution | Q57079021 | ||
| Freeing phylogenies from artifacts of alignment | Q67582288 | ||
| The evolution of the atpbeta-rbcL intergenic spacer in the epacrids (Ericales) and its systematic and evolutionary implications | Q74172381 | ||
| Antigenic stimulation by BCG vaccine as an in vivo driving force for SIV replication and dissemination | Q74453399 | ||
| The causes and consequences of HIV evolution | Q22251040 | ||
| Origin of HIV-1 in the chimpanzee Pan troglodytes troglodytes | Q22251299 | ||
| CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice | Q24286950 | ||
| MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
| Dating of the human-ape splitting by a molecular clock of mitochondrial DNA | Q27860908 | ||
| A codon-based model of nucleotide substitution for protein-coding DNA sequences | Q28241397 | ||
| Gaps as characters in sequence-based phylogenetic analyses | Q29614997 | ||
| Rare genomic changes as a tool for phylogenetics | Q29615984 | ||
| Joint Bayesian Estimation of Alignment and Phylogeny | Q30047793 | ||
| Molecular evolution of insertions and deletion in the chloroplast genome of silene | Q30310992 | ||
| Iterative pass optimization of sequence data | Q30816488 | ||
| Integrating ambiguously aligned regions of DNA sequences in phylogenetic analyses without violating positional homology | Q30836612 | ||
| Reassortment and insertion-deletion are strategies for the evolution of influenza B viruses in nature | Q33649395 | ||
| Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection | Q33825654 | ||
| Evidence that eukaryotes and eocyte prokaryotes are immediate relatives | Q34457672 | ||
| In vivo dynamics of equine infectious anemia viruses emerging during febrile episodes: insertions/duplications at the principal neutralizing domain | Q35887752 | ||
| Inching toward reality: an improved likelihood model of sequence evolution | Q35965228 | ||
| Elision: a method for accommodating multiple molecular sequence alignments with alignment-ambiguous sites | Q36688249 | ||
| Alignment-ambiguous nucleotide sites and the exclusion of systematic data | Q36733706 | ||
| Phylogenetic analysis of polyomavirus simian virus 40 from monkeys and humans reveals genetic variation | Q37348201 | ||
| Timing and reconstruction of the most recent common ancestor of the subtype C clade of human immunodeficiency virus type 1. | Q37511508 | ||
| Evolution of a noncoding region of the chloroplast genome | Q38569557 | ||
| Molecular evolution of the SARS coronavirus during the course of the SARS epidemic in China | Q42618656 | ||
| An evolutionary model for maximum likelihood alignment of DNA sequences | Q43642702 | ||
| Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA | Q44405236 | ||
| Indel patterns of the plastid DNA trnL- trnF region within the genus Poa (Poaceae). | Q45188481 | ||
| P921 | main subject | phylogenetics | Q171184 |
| emerging pathogen | Q108429945 | ||
| P304 | page(s) | 40 | |
| P577 | publication date | 2007-03-14 | |
| P1433 | published in | BMC Evolutionary Biology | Q13418959 |
| P1476 | title | Incorporating indel information into phylogeny estimation for rapidly emerging pathogens | |
| P478 | volume | 7 |
| Q38958742 | A Poissonian Model of Indel Rate Variation for Phylogenetic Tree Inference |
| Q37135049 | A gustatory receptor paralogue controls rapid warmth avoidance in Drosophila |
| Q35019952 | A note on probabilistic models over strings: the linear algebra approach |
| Q39788126 | A simple method to control over-alignment in the MAFFT multiple sequence alignment program |
| Q34959662 | Accelerated rate of molecular evolution for vittarioid ferns is strong and not driven by selection. |
| Q29576881 | Align or not to align? Resolving species complexes within the Caloplaca saxicola group as a case study |
| Q42643477 | Alignment uncertainty and genomic analysis |
| Q42024436 | Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences |
| Q39014262 | BayesCAT: Bayesian co-estimation of alignment and tree |
| Q64024904 | Biatora alnetorum (Ramalinaceae, Lecanorales), a new lichen species from western North America |
| Q35552659 | Ecosystem simplification, biodiversity loss and plant virus emergence. |
| Q34137998 | Erasing errors due to alignment ambiguity when estimating positive selection |
| Q57455166 | Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets |
| Q40050780 | Evolution and genome specialization of Brucella suis biovar 2 Iberian lineages. |
| Q46919946 | Evolution of a complex minisatellite DNA sequence |
| Q30351880 | Evolution of protein indels in plants, animals and fungi. |
| Q34359368 | Evolution of symbiosis in the legume genus Aeschynomene. |
| Q42380666 | Evolutionary drivers of thermoadaptation in enzyme catalysis |
| Q34320068 | Evolutionary inference via the Poisson Indel Process |
| Q41620493 | Evolutionary relationships of iridoviruses and divergence of ascoviruses from invertebrate iridoviruses in the superfamily Megavirales. |
| Q91529446 | Functional characterization of SMN evolution in mouse models of SMA |
| Q37625484 | Genomes as documents of evolutionary history |
| Q37031955 | Gradual neofunctionalization in the convergent evolution of trichomonad lactate and malate dehydrogenases |
| Q33567029 | Improving phylogenetic analyses by incorporating additional information from genetic sequence databases |
| Q29397409 | Iteratively Refined Guide Trees Help Improving Alignment and Phylogenetic Inference in the Mushroom Family Bolbitiaceae |
| Q37349255 | Long-Term Evolution of Burkholderia multivorans during a Chronic Cystic Fibrosis Infection Reveals Shifting Forces of Selection |
| Q92849025 | NGS-Indel Coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias) |
| Q99857747 | Peltigera islandica, a new cyanolichen species in sectionPeltigera(‘P. caninagroup’) |
| Q35541192 | Phycas: software for Bayesian phylogenetic analysis |
| Q39385004 | Phylogenetic Tree Estimation With and Without Alignment: New Distance Methods and Benchmarking |
| Q34042383 | Phylogeography takes a relaxed random walk in continuous space and time |
| Q30578638 | Re-mind the gap! Insertion - deletion data reveal neglected phylogenetic potential of the nuclear ribosomal internal transcribed spacer (ITS) of fungi |
| Q41966832 | SeqFIRE: a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments. |
| Q42352172 | Solving the master equation for Indels |
| Q56267120 | Split-inducing indels in phylogenomic analysis |
| Q34210170 | Standard maximum likelihood analyses of alignments with gaps can be statistically inconsistent |
| Q40823541 | Testing for universal common ancestry |
| Q21089760 | The hymenopteran tree of life: evidence from protein-coding genes and objectively aligned ribosomal data |
| Q57079003 | Uniting Alignments and Trees |
Search more.