scholarly article | Q13442814 |
P8978 | DBLP publication ID | journals/bmcbi/SrivastavaDNL07 |
P356 | DOI | 10.1186/1471-2105-8-104 |
P932 | PMC publication ID | 1852395 |
P698 | PubMed publication ID | 17389042 |
P5875 | ResearchGate publication ID | 6418546 |
P50 | author | Dhwani K Desai | Q42415673 |
P2093 | author name string | Prashant K Srivastava | |
Andrew M Lynn | |||
Soumyadeep Nandi | |||
P2860 | cites work | Hybrid alignment: high-performance with universal statistics. | Q52038190 |
Analysis and prediction of functional sub-types from protein sequence alignments. | Q52072935 | ||
A learning method of hidden Markov models for sequence discrimination. | Q52203520 | ||
A discriminative framework for detecting remote protein homologies | Q62494112 | ||
Functional classification using phylogenomic inference | Q21145680 | ||
A comprehensive update of the sequence and structure classification of kinases | Q21256426 | ||
The ENZYME database in 2000 | Q22242849 | ||
Gene ontology: tool for the unification of biology | Q23781406 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
The Pfam protein families database | Q24599089 | ||
MUSCLE: multiple sequence alignment with high accuracy and high throughput | Q24613456 | ||
Improved tools for biological sequence comparison | Q24652199 | ||
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER | Q24801213 | ||
Basic local alignment search tool | Q25938991 | ||
ALSCRIPT: a tool to format multiple sequence alignments | Q27860540 | ||
SCOP: a structural classification of proteins database for the investigation of sequences and structures | Q27860689 | ||
The conformational plasticity of protein kinases | Q27860946 | ||
Protein kinases 6. The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification | Q28131753 | ||
The relationship between protein structure and function: a comprehensive survey with application to the yeast genome | Q28144049 | ||
Protein homology detection by HMM-HMM comparison | Q28292161 | ||
Classifying G-protein coupled receptors with support vector machines | Q28679184 | ||
Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap | Q29544639 | ||
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure | Q29547343 | ||
Assessing the accuracy of prediction algorithms for classification: an overview | Q29615358 | ||
Amino acids determining enzyme-substrate specificity in prokaryotic and eukaryotic protein kinases | Q34957027 | ||
Convergent evolution of Trichomonas vaginalis lactate dehydrogenase from malate dehydrogenase | Q37204360 | ||
Improving profile HMM discrimination by adapting transition probabilities | Q44852949 | ||
Subfamily hmms in functional genomics. | Q45945006 | ||
COACH: profile-profile alignment of protein families using hidden Markov models | Q47611123 | ||
Structural and functional aspects of G protein-coupled receptor oligomerization | Q47835591 | ||
P304 | page(s) | 104 | |
P577 | publication date | 2007-03-27 | |
P1433 | published in | BMC Bioinformatics | Q4835939 |
P1476 | title | HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences | |
P478 | volume | 8 |
Q37319684 | Augmented training of hidden Markov models to recognize remote homologs via simulated evolution |
Q46336917 | Configurational assignment of secondary hydroxyl groups and methyl branches in polyketide natural products through bioinformatic analysis of the ketoreductase domain |
Q28474339 | Employing information theoretic measures and mutagenesis to identify residues critical for drug-proton antiport function in Mdr1p of Candida albicans |
Q42415610 | Factors influencing the diversity of iron uptake systems in aquatic microorganisms |
Q30524686 | Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum |
Q64055375 | Genomics-driven discovery of a biosynthetic gene cluster required for the synthesis of BII-Rafflesfungin from the fungus Phoma sp. F3723 |
Q35215270 | HMM-ModE: implementation, benchmarking and validation with HMMER3. |
Q37700192 | Hidden Markov Models and their Applications in Biological Sequence Analysis |
Q51724542 | Identification of putative Z-ring-associated proteins, involved in cell division in human pathogenic bacteria Helicobacter pylori. |
Q42599526 | ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities |
Q28472226 | Rational mutational analysis of a multidrug MFS transporter CaMdr1p of Candida albicans by employing a membrane environment based computational approach |