IS4 family goes genomic

scientific article

IS4 family goes genomic is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1042349355
P356DOI10.1186/1471-2148-8-18
P932PMC publication ID2266710
P698PubMed publication ID18215304
P5875ResearchGate publication ID5637036

P2093author name stringPatricia Siguier
Jacques Mahillon
Daniel De Palmenaer
P2860cites workSwine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviaeQ21972849
Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome SequenceQ22065447
The Genome of Sulfolobus acidocaldarius, a Model Organism of the CrenarchaeotaQ22065449
The Genome Sequence of Mycoplasma hyopneumoniae Strain 232, the Agent of Swine MycoplasmosisQ22065453
Complete genome sequence and comparative genomics of Shigella flexneri serotype 2a strain 2457TQ22065494
The Minimal Gene Complement of Mycoplasma genitaliumQ22065573
Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestrisQ22065748
The complete genome and proteome of Mycoplasma mobileQ22065754
The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP)Q22065764
Comparative genome analysis of Vibrio vulnificus, a marine pathogenQ22065766
Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysenteryQ22065981
The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of riceQ22065983
Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157Q22065995
The complete genomic sequence of Mycoplasma penetrans, an intracellular bacterial pathogen in humansQ22065996
Complete Genome Sequence of an Aerobic Thermoacidophilic Crenarchaeon, Sulfolobus tokodaii strain7Q22066062
Genome sequence of Halobacterium species NRC-1Q22066243
The complete genome of the crenarchaeon Sulfolobus solfataricus P2Q22066249
Insights into the evolution of Yersinia pestis through whole-genome comparison with Yersinia pseudotuberculosisQ22066387
Comparison of the genomes of two Xanthomonas pathogens with differing host specificitiesQ22122346
DNA sequence of both chromosomes of the cholera pathogen Vibrio choleraeQ22122394
Comparison of Francisella tularensis genomes reveals evolutionary events associated with the emergence of human pathogenic strains.Q38606114
Comparative analysis of the genomes of the bacteria Mycoplasma pneumoniae and Mycoplasma genitaliumQ39719225
IS231A from Bacillus thuringiensis is functional in Escherichia coli: transposition and insertion specificityQ39942418
IS231 and other Bacillus thuringiensis transposable elements: a reviewQ40564727
Active site sharing and subterminal hairpin recognition in a new class of DNA transposasesQ42670024
The IS4 family of insertion sequences: evidence for a conserved transposase motifQ42694238
IS231-MIC231 elements from Bacillus cereus sensu lato are modularQ44959777
MIC231, a naturally occurring mobile insertion cassette from Bacillus cereusQ47965291
Causes of insertion sequences abundance in prokaryotic genomesQ48082049
A weighting system and algorithm for aligning many phylogenetically related sequences.Q52327812
IS231A insertion specificity: consensus sequence and DNA bending at the target siteQ72431306
IS231A transposition: conservative versus replicative pathwayQ77489081
I am what I eat and I eat what I am: acquisition of bacterial genes by giant virusesQ79365031
Lateral gene transfer and the nature of bacterial innovationQ22122396
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choiceQ24286950
ISfinder: the reference centre for bacterial insertion sequencesQ24538230
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
M-Coffee: combining multiple sequence alignment methods with T-CoffeeQ25257876
Three-dimensional structure of the Tn5 synaptic complex transposition intermediateQ27625249
Two-metal active site binding of a Tn5 transposase synaptic complexQ27638356
Structure of the bacteriophage Mu transposase core: a common structural motif for DNA transposition and retroviral integrationQ27729788
T-Coffee: A novel method for fast and accurate multiple sequence alignmentQ27860999
The Jalview Java alignment editorQ27861026
TreeView: an application to display phylogenetic trees on personal computersQ27861074
An efficient algorithm for large-scale detection of protein familiesQ28131838
Life at Depth: Photobacterium profundum Genome Sequence and Expression AnalysisQ29400080
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignmentQ29614438
Insertion sequencesQ29617579
Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V cholerae.Q30332577
Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a.Q33248973
IS1549 from Mycobacterium smegmatis forms long direct repeats upon insertionQ33724972
Integrating DNA: transposases and retroviral integrasesQ33765939
Systematic sequencing of cDNA clones using the transposon Tn5Q33891680
Systematic mutagenesis of the Escherichia coli genomeQ33980052
IS1634, a novel insertion element creating long, variable-length direct repeats which is specific for Mycoplasma mycoides subsp. mycoides small-colony typeQ33991300
Transposition of ISHp608, member of an unusual family of bacterial insertion sequencesQ34016167
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchisepticaQ34221221
Unity in transposition reactionsQ34296425
The outs and ins of transposition: from mu to kangarooQ35610274
Insertion sequence diversity in archaeaQ35740880
Regulation of transposition in bacteria.Q35811231
A survey of bacterial insertion sequences using IScanQ36059490
Mobile DNA in obligate intracellular bacteriaQ36247068
Residues critical for retroviral integrative recombination in a region that is highly conserved among retroviral/retrotransposon integrases and bacterial insertion sequence transposasesQ36815395
Tn5/IS50 target recognition.Q37484335
Comparative sequence analysis of IS50/Tn5 transposaseQ37663135
P304page(s)18
P577publication date2008-01-23
P1433published inBMC Evolutionary BiologyQ13418959
P1476titleIS4 family goes genomic
P478volume8

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cites work (P2860)
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Q42501406Architecture of the Tn7 posttransposition complex: an elaborate nucleoprotein structure
Q38185470Bacterial insertion sequences: their genomic impact and diversity
Q37256169Complete genome sequence of the chemolithoautotrophic marine magnetotactic coccus strain MC-1.
Q64911760Diversity of Bacillus cereus sensu lato mobilome.
Q34106981Eukaryote DIRS1-like retrotransposons: an overview
Q35987561Extensive Mobilome-Driven Genome Diversification in Mouse Gut-Associated Bacteroides vulgatus mpk
Q28608334Genomic DNA transposition induced by human PGBD5
Q97536459IS982 and kin: new insights into an old IS family
Q35015774Improving prokaryotic transposable elements identification using a combination of de novo and profile HMM methods
Q35005140Insertion sequence ISAba11 is involved in colistin resistance and loss of lipopolysaccharide in Acinetobacter baumannii.
Q34168666Insights into the transposable mobilome of Paracoccus spp. (Alphaproteobacteria)
Q34999545LIA5 is required for nuclear reorganization and programmed DNA rearrangements occurring during tetrahymena macronuclear differentiation
Q37346481Molecular Mechanisms Contributing to the Growth and Physiology of an Extremophile Cultured with Dielectric Heating.
Q28660098PGBD5: a neural-specific intron-containing piggyBac transposase domesticated over 500 million years ago and conserved from cephalochordates to humans
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Q27652151Phosphate coordination and movement of DNA in the Tn5 synaptic complex: role of the (R)YREK motif
Q33437401Pyramidobacter piscolens gen. nov., sp. nov., a member of the phylum 'Synergistetes' isolated from the human oral cavity
Q58758056Role of plasmid plasticity and mobile genetic elements in the entomopathogen Bacillus thuringiensis serovar israelensis
Q47699403Salt stress-induced loss of iron oxido-reduction activities and re-acquisition of this phenotype depend on the rus operon transcription in Acidithiobacillus ferridurans
Q27316494Structural and functional analysis of the finished genome of the recently isolated toxic Anabaena sp. WA102.
Q39240966The impact of insertion sequences on bacterial genome plasticity and adaptability.
Q35996731Transposase interaction with the β sliding clamp: effects on insertion sequence proliferation and transposition rate
Q92402095Transposition of IS4 Family Insertion Sequences ISTeha3, ISTeha4, and ISTeha5 into the arc Operon Disrupts Arginine Deiminase System in Tetragenococcus halophilus
Q90722933Transposition of Insertion Sequences was Triggered by Oxidative Stress in Radiation-Resistant Bacterium Deinococcus geothermalis
Q50134197Transposition of Tn1213 encoding the PER-1 Extended Spectrum β-lactamase.
Q46310348Transposon-mediated directed mutation in bacteria and eukaryotes

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