Specific chicken repeat 1 (CR1) retrotransposon insertion suggests phylogenetic affinity of rockfowls (genus Picathartes) to crows and ravens (Corvidae).

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Specific chicken repeat 1 (CR1) retrotransposon insertion suggests phylogenetic affinity of rockfowls (genus Picathartes) to crows and ravens (Corvidae). is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1016/J.YMPEV.2006.10.020
P698PubMed publication ID17174112

P50authorRalph TiedemannQ25448451
P2093author name stringSimone Treplin
P2860cites workChicken repeat 1 (CR1) elements, which define an ancient family of vertebrate non-LTR retrotransposons, contain two closely spaced open reading framesQ42665232
Determination of the entire sequence of turtle CR1: the first open reading frame of the turtle CR1 element encodes a protein with a novel zinc finger motifQ42669296
A LINE element from the pufferfish (fugu) Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposonsQ42692466
Probability distribution of molecular evolutionary trees: a new method of phylogenetic inferenceQ44580766
Consistency of SINE insertion topology and flanking sequence tree: quantifying relationships among cetartiodactylsQ45211341
The first non-LTR retrotransposon characterised in the cephalochordate amphioxus, BfCR1, shows similarities to CR1-like elementsQ47862246
A new pair of CR1-like LINE and tRNA-derived SINE elements in Podarcis sicula genomeQ48173405
Characterization of deoxyribonucleic acid sequences at the 5' and 3' borders of the 100-kilobase pair ovalbumin gene domainQ48400436
Bayesian phylogenetic inference via Markov chain Monte Carlo methods.Q52065035
Accommodating phylogenetic uncertainty in evolutionary studies.Q52076868
Inter-generic relationships of the crows, jays, magpies and allied groups (Aves: Corvidae) based on nucleotide sequence dataQ54002521
Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic TreesQ58333612
Evolution, biogeography, and patterns of diversification in passerine birdsQ59486362
Éléments mobiles SINE en phylogénieQ63641856
A Numerical Approach to Phylogenetic SystematicsQ101634718
Phylogeny and diversification of the largest avian radiationQ24563351
Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphinsQ24630096
A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence dataQ24670280
A Gondwanan origin of passerine birds supported by DNA sequences of the endemic New Zealand wrensQ24670303
African endemics span the tree of songbirds (Passeri): molecular systematics of several evolutionary 'enigmas'Q24676899
Phylogenetic relationships among cetartiodactyls based on insertions of short and long interpersed elements: hippopotamuses are the closest extant relatives of whalesQ24679699
Confidence Limits on Phylogenies: an Approach using the BootstrapQ26778379
MRBAYES: Bayesian inference of phylogenetic treesQ27860538
Evolutionary trees from DNA sequences: A maximum likelihood approachQ27860898
SINE insertions: powerful tools for molecular systematicsQ28143764
What is not a bird of paradise? Molecular and morphological evidence places Macgregoria in the Meliphagidae and the Cnemophilinae near the base of the corvoid treeQ28765921
A phylogenetic supertree of oscine passerine birds (Aves: Passeri)Q29038083
Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes).Q30711572
Phylogeny of Passerida (Aves: Passeriformes) based on nuclear and mitochondrial sequence dataQ30824699
Systematic affinities of the lyrebirds (Passeriformes: Menura), with a novel classification of the major groups of passerine birdsQ31114448
SINE evolution, missing data, and the origin of whales.Q32157924
The African warbler genus Hyliota as a lost lineage in the Oscine songbird tree: molecular support for an African origin of the PasseridaQ33223918
The rise and fall of the CR1 subfamily in the lineage leading to penguinsQ33230019
The age and evolution of non-LTR retrotransposable elementsQ33864837
Molecular evidence from retroposons that whales form a clade within even-toed ungulates.Q34435997
Chicken repeat 1 elements contain a pol-like open reading frame and belong to the non-long terminal repeat class of retrotransposonsQ36516467
Evidence that chicken CR1 elements represent a novel family of retroposonsQ36759499
Sequence conservation in avian CR1: an interspersed repetitive DNA family evolving under functional constraintsQ37541805
Phylogenetic relationships among the major lineages of the birds-of-paradise (Paradisaeidae) using mitochondrial DNA gene sequencesQ38393864
A retrotransposon of the non-long terminal repeat class from the human blood fluke Schistosoma mansoni. Similarities to the chicken-repeat-1-like elements of vertebratesQ38557511
A recent chicken repeat 1 retrotransposition confirms the Coscoroba-Cape Barren goose cladeQ39131335
A chicken middle-repetitive DNA sequence which shares homology with mammalian ubiquitous repeatsQ40500227
Non-LTR retrotransposons in the African malaria mosquito, Anopheles gambiae: unprecedented diversity and evidence of recent activityQ42602529
First application of the SINE (short interspersed repetitive element) method to infer phylogenetic relationships in reptiles: an example from the turtle superfamily TestudinoideaQ42621945
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectCorvidaeQ25565
phylogeneticsQ171184
retrotransposonQ413988
P1104number of pages10
P304page(s)328-337
P577publication date2006-11-06
P1433published inMolecular Phylogenetics and EvolutionQ4248868
P1476titleSpecific chicken repeat 1 (CR1) retrotransposon insertion suggests phylogenetic affinity of rockfowls (genus Picathartes) to crows and ravens (Corvidae).
P478volume43

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cites work (P2860)
Q34241166A universal method for the study of CR1 retroposons in nonmodel bird genomes
Q46606819An update of Wallace's zoogeographic regions of the world
Q33633487Calibration of mutation rates reveals diverse subfamily structure of galliform CR1 repeats
Q46237003De-novo emergence of SINE retroposons during the early evolution of passerine birds
Q33491932Evolution of serum albumin intron-1 is shaped by a 5' truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia).
Q39957860Identification of CR1 retroposons in Arborophila rufipectus and their application to Phasianidae phylogeny
Q41031346Low diversity, activity, and density of transposable elements in five avian genomes
Q56211294Molecular phylogeny of songbirds (Aves: Passeriformes) and the relative utility of common nuclear marker loci
Q28715065Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds

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