A quantitative estimation of the global translational activity in logarithmically growing yeast cells

scientific article

A quantitative estimation of the global translational activity in logarithmically growing yeast cells is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bmcsb/Haar08
P6179Dimensions Publication ID1035912842
P356DOI10.1186/1752-0509-2-87
P932PMC publication ID2590609
P698PubMed publication ID18925958
P5875ResearchGate publication ID23389010

P50authorTobias von der HaarQ58828466
P2860cites workQuantification of protein half-lives in the budding yeast proteomeQ24674092
Comparing protein abundance and mRNA expression levels on a genomic scaleQ24682985
Dissecting eukaryotic translation and its control by ribosome density mappingQ24793726
Global analysis of protein expression in yeastQ27860658
Identification of partners of TIF34, a component of the yeast eIF3 complex, required for cell proliferation and translation initiationQ27931049
The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeastQ27936929
Kinetics of the interactions between yeast elongation factors 1A and 1Balpha, guanine nucleotides, and aminoacyl-tRNA.Q27937618
Post-transcriptional expression regulation in the yeast Saccharomyces cerevisiae on a genomic scale.Q52966522
Folding transitions during assembly of the eukaryotic mRNA cap-binding complex.Q54123042
Processivity errors of gene expression in Escherichia coli.Q54707242
Ribosomal RNA synthesis in Saccharomyces cerevisiaeQ54725005
Kinetic Analysis of Interaction of Eukaryotic Release Factor 3 with Guanine NucleotidesQ59349104
On the regulation of ribosomal RNA synthesis in yeastQ72539830
Purification and kinetic analysis of eIF2B from Saccharomyces cerevisiaeQ73893684
Intracellular translation initiation factor levels in Saccharomyces cerevisiae and their role in cap-complex functionQ78445932
Kinetic analysis of the interaction of guanine nucleotides with eukaryotic translation initiation factor eIF5BQ79768537
Coupled release of eukaryotic translation initiation factors 5B and 1A from 80S ribosomes following subunit joining.Q27939079
Dissecting the regulatory circuitry of a eukaryotic genomeQ28131632
The economics of ribosome biosynthesis in yeastQ28131645
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitationQ28286620
Optimized protein extraction for quantitative proteomics of yeastsQ28469329
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noiseQ29615953
How ribosomes make peptide bondsQ34001369
The molecular mechanics of eukaryotic translationQ34326035
eIF2B, a mediator of general and gene-specific translational controlQ34462402
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.Q34594316
Genome-wide analysis of mRNA translation profiles in Saccharomyces cerevisiaeQ34918391
Global response of Saccharomyces cerevisiae to an alkylating agentQ34994555
N- and C-terminal residues of eIF1A have opposing effects on the fidelity of start codon selectionQ35691356
Change in nutritional status modulates the abundance of critical pre-initiation intermediate complexes during translation initiation in vivoQ36092079
Regulated translational bypass of stop codons in yeast.Q36691978
Cellular content of ribonucleic acid and protein in Saccharomyces cerevisiae as a function of exponential growth rate: calculation of the apparent peptide chain elongation rateQ36762099
Balanced production of ribosomal proteinsQ36906394
Halting a cellular production line: responses to ribosomal pausing during translationQ36909437
Coordinate control of syntheses of ribosomal ribonucleic acid and ribosomal proteins during nutritional shift-up in Saccharomyces cerevisiaeQ36969410
Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeastQ40092046
Number and distribution of polyadenylated RNA sequences in yeastQ40755633
Evidence for a high proportion of inactive ribosomes in slow-growing yeast cellsQ40865278
Distributed control for recruitment, scanning and subunit joining steps of translation initiationQ42538844
GTP-dependent recognition of the methionine moiety on initiator tRNA by translation factor eIF2.Q44708250
Transcript abundance in yeast varies over six orders of magnitudeQ46484149
The elongation rate of proteins of different molecular weight classes in yeastQ47356485
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P304page(s)87
P577publication date2008-10-16
P1433published inBMC Systems BiologyQ4835949
P1476titleA quantitative estimation of the global translational activity in logarithmically growing yeast cells
P478volume2

Reverse relations

cites work (P2860)
Q90473689"NAD-capQ" detection and quantitation of NAD caps
Q33649778A comprehensive, quantitative, and genome-wide model of translation
Q38253819A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
Q95272885A new protocol for single-cell RNA-seq reveals stochastic gene expression during lag phase in budding yeast
Q50865475A strategy for absolute proteome quantification with mass spectrometry by hierarchical use of peptide-concatenated standards.
Q57036614Accounting for Programmed Ribosomal Frameshifting in the Computation of Codon Usage Bias Indices
Q48171092Advantages of meta-total RNA sequencing (MeTRS) over shotgun metagenomics and amplicon-based sequencing in the profiling of complex microbial communities.
Q27940186Alpha-arrestins Aly1 and Aly2 regulate intracellular trafficking in response to nutrient signaling
Q40087239An in vivo control map for the eukaryotic mRNA translation machinery
Q31053878Balanced codon usage optimizes eukaryotic translational efficiency
Q52364252Capturing the 'ome': the expanding molecular toolbox for RNA and DNA library construction.
Q42321520Cell-to-Cell Communication Circuits: Quantitative Analysis of Synthetic Logic Gates
Q38909282Challenges of Integrating Stochastic Dynamics and Cryo-Electron Tomograms in Whole-Cell Simulations
Q35537905Co-regulation of translation in protein complexes
Q52610166Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources.
Q58734148Context-dependent prediction of protein complexes by SiComPre
Q31050806Epistasis for growth rate and total metabolic flux in yeast
Q34620515Estimating selection on synonymous codon usage from noisy experimental data
Q30354567Evaluating the fitness cost of protein expression in Saccharomyces cerevisiae.
Q38468872Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling.
Q37167749Exploring the roles of noise in the eukaryotic cell cycle.
Q47664727Feedback regulation of ribosome assembly.
Q33531761Functional overlap between eIF4G isoforms in Saccharomyces cerevisiae
Q41859001Functional specialization of ribosomes?
Q38333079Glucose depletion inhibits translation initiation via eIF4A loss and subsequent 48S preinitiation complex accumulation, while the pentose phosphate pathway is coordinately up-regulated
Q41983883Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation
Q34628709In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae
Q90333949Individual Copy Number of Ribosomal Genes as a Factor of Mental Retardation and Autism Risk and Severity
Q38201020Mathematical and Computational Modelling of Ribosomal Movement and Protein Synthesis: an overview
Q36875727Mechanism and Regulation of Protein Synthesis in Saccharomyces cerevisiae
Q34170937Mechanisms for ATP-dependent chromatin remodelling: the means to the end
Q64904454Modelling and measuring intracellular competition for finite resources during gene expression.
Q61797646Networks of ribosome flow models for modeling and analyzing intracellular traffic
Q64077437Novel insights into gene expression regulation during meiosis revealed by translation elongation dynamics
Q46433025Novel tRNA function in amino acid sensing of yeast Tor complex1.
Q37637553Nuclear Compartmentalization Contributes to Stage-Specific Gene Expression Control in Trypanosoma cruzi
Q27934673Nucleotide degradation and ribose salvage in yeast
Q58740967Predicting proteome dynamics using gene expression data
Q41578142Principles of cellular resource allocation revealed by condition-dependent proteome profiling.
Q41861567Principles of cotranslational ubiquitination and quality control at the ribosome
Q55004293Properties of the ternary complex formed by yeast eIF4E, p20 and mRNA.
Q28550460Qualitative and Quantitative Protein Complex Prediction Through Proteome-Wide Simulations
Q46488756Quantitating translational control: mRNA abundance-dependent and independent contributions and the mRNA sequences that specify them
Q92530058Quantitative principles of cis-translational control by general mRNA sequence features in eukaryotes
Q36959359Rate-limiting steps in yeast protein translation
Q88670916Roadblocks and resolutions in eukaryotic translation
Q51614438Slow sites in an exclusion process with limited resources.
Q38231225Synonymous codons, ribosome speed, and eukaryotic gene expression regulation
Q59103173Synthetic Crossfeeding Cocultures in Yeast: Computational Model of Autoregulation and Design of a Tryptophan Export Device
Q41516802The architecture of eukaryotic translation
Q37637130The control of translational accuracy is a determinant of healthy ageing in yeast.
Q34055229The dynamics of supply and demand in mRNA translation
Q48149977The extent of ribosome queuing in budding yeast.
Q43788337The mTORC1 Signaling Network Senses Changes in Cellular Purine Nucleotide Levels
Q89521961The molecular aetiology of tRNA synthetase depletion: induction of a GCN4 amino acid starvation response despite homeostatic maintenance of charged tRNA levels
Q41858852The role of tRNA and ribosome competition in coupling the expression of different mRNAs in Saccharomyces cerevisiae
Q64063837The small and large ribosomal subunits depend on each other for stability and accumulation
Q47565280The thermodynamic efficiency of computations made in cells across the range of life
Q38180775The translational machinery is an optimized molecular network that affects cellular homoeostasis and disease
Q34989523Transimulation - protein biosynthesis web service
Q37708983Translation elongation can control translation initiation on eukaryotic mRNAs
Q28535333Translation initiation factors eIF3 and HCR1 control translation termination and stop codon read-through in yeast cells
Q26782007What is the total number of protein molecules per cell volume? A call to rethink some published values
Q37381297Zebrafish P54 RNA helicases are cytoplasmic granule residents that are required for development and stress resilience.
Q38845545eIF5A Functions Globally in Translation Elongation and Termination.
Q53563846iOD907, the first genome-scale metabolic model for the milk yeast Kluyveromyces lactis.

Search more.