A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins

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A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/EnsteroALWFOL10
P356DOI10.1186/1471-2105-11-6
P932PMC publication ID2831006
P698PubMed publication ID20047656
P5875ResearchGate publication ID40846556

P50authorTerrence S. FureyQ30361580
Daniel LundinQ58901331
Jens LagergrenQ62008285
P2093author name stringBei Wang
Marie Ohman
Mats Ensterö
Orjan Akerborg
P2860cites workA method to find tissue-specific novel sites of selective adenosine deaminationQ24536298
A phylogenetic analysis reveals an unusual sequence conservation within introns involved in RNA editingQ24539735
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Human-mouse alignments with BLASTZQ24561679
Sequence logos: a new way to display consensus sequencesQ24598387
Optimal computer folding of large RNA sequences using thermodynamics and auxiliary informationQ24602467
dbSNP: the NCBI database of genetic variationQ24608672
Screening of human SNP database identifies recoding sites of A-to-I RNA editingQ24644302
Entrez Gene: gene-centered information at NCBIQ24670011
RNA editing by adenosine deaminases that act on RNAQ24679593
BLAT—The BLAST-Like Alignment ToolQ24682492
Editing modifies the GABA(A) receptor subunit alpha3Q24682501
Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptomeQ24806860
Double-stranded RNA adenosine deaminases ADAR1 and ADAR2 have overlapping specificitiesQ73102498
The importance of internal loops within RNA substrates of ADAR1Q78101993
GenBankQ79484297
Identification of RNA editing sites in the SNP databaseQ24813175
Dating of the human-ape splitting by a molecular clock of mitochondrial DNAQ27860908
The UCSC Genome Browser DatabaseQ27861125
Nervous system targets of RNA editing identified by comparative genomicsQ28156219
Liver Disintegration in the Mouse Embryo Caused by Deficiency in the RNA-editing Enzyme ADAR1Q28184194
Regulating gene expression through RNA nuclear retentionQ28278213
Requirement of the RNA editing deaminase ADAR1 gene for embryonic erythropoiesisQ28510594
TimeTree: a public knowledge-base of divergence times among organismsQ29547188
dbEST--database for "expressed sequence tags"Q29547785
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignmentQ29614438
Systematic identification of abundant A-to-I editing sites in the human transcriptomeQ29619584
Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2Q29619718
Replication of association between ELAVL4 and Parkinson disease: the GenePD studyQ30439050
A survey of RNA editing in human brainQ31127917
A bioinformatic screen for novel A-I RNA editing sites reveals recoding editing in BC10.Q33213349
Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.Q33440175
Identification and characterization of multi-species conserved sequencesQ33683429
Genome-wide identification of human RNA editing sites by parallel DNA capturing and sequencingQ34983645
RNA editing level in the mouse is determined by the genomic repeat repertoireQ35057501
A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulatorsQ35190969
Recognition of double-stranded RNA by proteins and small moleculesQ35202548
The double-stranded-RNA-binding motif: interference and much moreQ35968493
Breaking the central dogma by RNA editingQ36559666
Neuronal regulation of alternative pre-mRNA splicingQ36951678
Long RNA hairpins that contain inosine are present in Caenorhabditis elegans poly(A)+ RNAQ37195281
Diverse molecular functions of Hu proteinsQ37200596
A method for finding sites of selective adenosine deaminationQ38299617
Notch3 and the Notch3-upregulated RNA-binding protein HuD regulate Ikaros alternative splicingQ38304159
Regulation of neuron-specific alternative splicing of neurofibromatosis type 1 pre-mRNA.Q41960596
A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrityQ47070866
TEXshade: shading and labeling of multiple sequence alignments using LATEX2 epsilon.Q52077703
P921main subjectcomputational biologyQ177005
P304page(s)6
P577publication date2010-01-04
P1433published inBMC BioinformaticsQ4835939
P1476titleA computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins
P478volume11