Finding sRNA generative locales from high-throughput sequencing data with NiBLS.

scientific article

Finding sRNA generative locales from high-throughput sequencing data with NiBLS. is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/MacLeanMS10
P6179Dimensions Publication ID1045233097
P356DOI10.1186/1471-2105-11-93
P932PMC publication ID2837031
P698PubMed publication ID20167070
P5875ResearchGate publication ID41485725

P50authorDavid J. StudholmeQ42734162
P2093author name stringVincent Moulton
Daniel MacLean
P2860cites workDiscovering microRNAs from deep sequencing data using miRDeepQ28275278
RNA silencing in plantsQ28282572
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAsQ28297634
SSAHA: a fast search method for large DNA databasesQ29614458
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegansQ29616062
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PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesisQ30481498
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miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtiiQ34632978
Bioinformatic prediction and experimental validation of a microRNA-directed tandem trans-acting siRNA cascade in ArabidopsisQ35652561
The role of RNA interference in heterochromatic silencingQ35889567
The diversity of RNA silencing pathways in plantsQ36432959
Application of 'next-generation' sequencing technologies to microbial geneticsQ37415296
A toolkit for analysing large-scale plant small RNA datasetsQ48073452
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
Collective dynamics of 'small-world' networksQ27861064
SOAP: short oligonucleotide alignment programQ28266228
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P407language of work or nameEnglishQ1860
P921main subjecthigh-throughput sequencingQ112147935
P304page(s)93
P577publication date2010-02-18
P1433published inBMC BioinformaticsQ4835939
P1476titleFinding sRNA generative locales from high-throughput sequencing data with NiBLS.
P478volume11

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cites work (P2860)
Q28661336CoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data
Q31164955Considerations and complications of mapping small RNA high-throughput data to transposable elements
Q37970066Deep sequencing of small RNAs in plants: applied bioinformatics
Q34888345Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions
Q38196240Seeing the forest for the trees: annotating small RNA producing genes in plants
Q36932867ShortStack: comprehensive annotation and quantification of small RNA genes
Q37931776Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches
Q55074744Towards annotating the plant epigenome: the Arabidopsis thaliana small RNA locus map.
Q30572487ncPRO-seq: a tool for annotation and profiling of ncRNAs in sRNA-seq data

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