Predictive long-range allele-specific mapping of regulatory variants and target transcripts

scientific article

Predictive long-range allele-specific mapping of regulatory variants and target transcripts is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2017PLoSO..1275768L
P356DOI10.1371/JOURNAL.PONE.0175768
P932PMC publication ID5391085
P698PubMed publication ID28406955

P50authorSeulkee LeeQ92084962
P2093author name stringJung Kyoon Choi
Hyoeun Bang
Kibaick Lee
P2860cites workRandom ForestsQ115707260
Transcriptome and genome sequencing uncovers functional variation in humansQ34371227
A high-resolution map of the three-dimensional chromatin interactome in human cellsQ34378943
FIMO: scanning for occurrences of a given motifQ34729603
DNase I sensitivity QTLs are a major determinant of human expression variationQ36408973
Pooled ChIP-Seq Links Variation in Transcription Factor Binding to Complex Disease RiskQ36828596
WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013Q36954017
Genome-wide allele-specific analysis: insights into regulatory variationQ37766748
Sensitive detection of chromatin-altering polymorphisms reveals autoimmune disease mechanismsQ38896272
Identification of genetic variants that affect histone modifications in human cellsQ39077207
A controlled trial of natalizumab for relapsing multiple sclerosis.Q48414534
Population Variation and Genetic Control of Modular Chromatin Architecture in HumansQ62083310
An integrated map of genetic variation from 1,092 human genomesQ22122153
The NHGRI GWAS Catalog, a curated resource of SNP-trait associationsQ24568334
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identitiesQ24617969
Fast and accurate short read alignment with Burrows-Wheeler transformQ24653853
TopHat: discovering splice junctions with RNA-SeqQ24655505
The structure of haplotype blocks in the human genomeQ27860500
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing dataQ27860742
Haploview: analysis and visualization of LD and haplotype mapsQ27860955
Natalizumab for active Crohn's diseaseQ28201431
Obesity-associated variants within FTO form long-range functional connections with IRX3Q28236283
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal InteractionsQ28266525
ENCODE data in the UCSC Genome Browser: year 5 updateQ28280234
Deficiency of Rap1-binding protein RAPL causes lymphoproliferative disorders through mislocalization of p27kip1Q28587588
Genetic and epigenetic fine mapping of causal autoimmune disease variantsQ28649603
The Genotype-Tissue Expression (GTEx) projectQ28657968
A framework for variation discovery and genotyping using next-generation DNA sequencing dataQ29547262
Mapping and analysis of chromatin state dynamics in nine human cell typesQ29547552
The variant call format and VCFtoolsQ29614172
Understanding mechanisms underlying human gene expression variation with RNA sequencingQ29614412
Transcriptome genetics using second generation sequencing in a Caucasian populationQ29614413
Systematic localization of common disease-associated variation in regulatory DNAQ29614895
The long-range interaction landscape of gene promotersQ29615403
Integrating GWAS and expression data for functional characterization of disease-associated SNPs: an application to follicular lymphomaQ30581981
The UCSC Genome Browser database: 2015 updateQ30872157
Extensive variation in chromatin states across humansQ33823781
Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcriptionQ33886586
Genetic landscape of open chromatin in yeast.Q34035574
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)e0175768
P577publication date2017-04-13
P1433published inPLOS OneQ564954
P1476titlePredictive long-range allele-specific mapping of regulatory variants and target transcripts
P478volume12

Search more.