Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.).

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Duplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.). is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1019731816
P356DOI10.1186/1471-2229-10-119
P932PMC publication ID3095280
P698PubMed publication ID20565911
P5875ResearchGate publication ID44690421

P2093author name stringAlan E Pepper
Abdusattor Abdukarimov
Zabardast T Buriev
Ibrokhim Y Abdurakhmonov
Carla Jo Logan-Young
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Phytochrome A Mediates the Promotion of Seed Germination by Very Low Fluences of Light and Canopy Shade Light in ArabidopsisQ74776093
The Induction of Seed Germination in Arabidopsis thaliana Is Regulated Principally by Phytochrome B and Secondarily by Phytochrome AQ74789400
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PCR-mediated recombination in amplification products derived from polyploid cottonQ78971311
Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genesQ84338932
A photoperiod-insensitive barley line contains a light-labile phytochrome BQ95288063
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Duplicated genes evolve independently after polyploid formation in cottonQ36745584
The sorghum photoperiod sensitivity gene, Ma3, encodes a phytochrome B.Q36848021
Genetic redundancy in soybean photoresponses associated with duplication of the phytochrome A geneQ36936890
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Purifying selection and birth-and-death evolution in the ubiquitin gene familyQ37263750
The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thalianaQ38393641
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Nucleotide polymorphism and phenotypic associations within and around the phytochrome B2 Locus in European aspen (Populus tremula, Salicaceae).Q43152560
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Phylogenetic relationships of B-related phytochromes in the Brassicaceae: Redundancy and the persistence of phytochrome D.Q45779524
Overexpressed phytochrome C has similar photosensory specificity to phytochrome B but a distinctive capacity to enhance primary leaf expansion.Q45944308
Cryptochromes are required for phytochrome signaling to the circadian clock but not for rhythmicityQ46115724
Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis developmentQ46461760
Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways.Q46898950
Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum arose prior to PsilotumQ47196298
Molecular evolution of the phytochrome gene family in sorghum: changing rates of synonymous and replacement evolutionQ47205398
Mutant analyses define multiple roles for phytochrome C in Arabidopsis photomorphogenesisQ47650170
Rate variation among nuclear genes and the age of polyploidy in GossypiumQ47990139
The phytochrome gene family in tomato includes a novel subfamilyQ48068751
The PHYC gene of Arabidopsis. Absence of the third intron found in PHYA and PHYB.Q48078551
Phytochrome A mediates blue light and UV-A-dependent chloroplast gene transcription in green leaves.Q50506031
Phytochrome B in the mesophyll delays flowering by suppressing FLOWERING LOCUS T expression in Arabidopsis vascular bundles.Q50763207
Phytochrome evolution in green and nongreen plants.Q50778646
RDP2: recombination detection and analysis from sequence alignments.Q51989136
Phytochrome phosphorylation modulates light signaling by influencing the protein-protein interaction.Q53634370
Antagonistic but complementary actions of phytochromes A and B allow seedling de-etiolation.Q53968902
Phytochrome control of flowering is temperature sensitive and correlates with expression of the floral integratorFTQ59303650
Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor familyQ69417103
Tomato contains two differentially expressed genes encoding B-type phytochromes, neither of which can be considered an ortholog of Arabidopsis phytochrome BQ71792470
A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markersQ72237282
The phytochrome gene family in tomato and the rapid differential evolution of this family in angiospermsQ73563117
CONSTANS mediates between the circadian clock and the control of flowering in ArabidopsisQ73808180
Phytochromes confer the photoperiodic control of flowering in rice (a short-day plant)Q73884382
Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering timeQ74590487
P921main subjectphotoreceptor proteinQ7187894
P304page(s)119
P577publication date2010-06-20
P1433published inBMC Plant BiologyQ15760766
P1476titleDuplication, divergence and persistence in the Phytochrome photoreceptor gene family of cottons (Gossypium spp.).
P478volume10

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cites work (P2860)
Q42368889A Comprehensive Phylogeny Reveals Functional Conservation of the UV-B Photoreceptor UVR8 from Green Algae to Higher Plants
Q36173365Development, genetic mapping and QTL association of cotton PHYA, PHYB, and HY5-specific CAPS and dCAPS markers
Q41338660Ectopic expression of a phytochrome B gene from Chinese cabbage (Brassica rapa L. ssp. pekinensis) in Arabidopsis thaliana promotes seedling de-etiolation, dwarfing in mature plants, and delayed flowering
Q34081785Ectopic expression reveals a conserved PHYB homolog in soybean
Q64078997Gene flow signature in the S-allele region of cultivated buckwheat
Q47840643Phytochrome RNAi enhances major fibre quality and agronomic traits of the cotton Gossypium hirsutum L.
Q42708345QTL mapping for flowering-time and photoperiod insensitivity of cotton Gossypium darwinii Watt
Q44822073The phytochrome gene family in soybean and a dominant negative effect of a soybean PHYA transgene on endogenous Arabidopsis PHYA.

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