Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: A review

scientific article published on September 16, 2010

Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: A review is …
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scholarly articleQ13442814

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P356DOI10.3109/1040841X.2010.512268
P953full work available at URLhttp://www.tandfonline.com/doi/pdf/10.3109/1040841X.2010.512268
P698PubMed publication ID20846026
P5875ResearchGate publication ID46287220

P2093author name stringJoydeep Chakraborty
Somnath Mallick
Tapan K. Dutta
P2860cites workPharmacological ReviewsQ2085079
Journal of the Chemical SocietyQ903605
The naphthalene catabolic (nag) genes of Polaromonas naphthalenivorans CJ2: evolutionary implications for two gene clusters and novel regulatory controlQ24544059
Biochemical and genetic characterization of 2-carboxybenzaldehyde dehydrogenase, an enzyme involved in phenanthrene degradation by Nocardioides sp. strain KP7Q24676759
Isolation and characterization of a fluorene-degrading bacterium: identification of ring oxidation and ring fission productsQ24676797
Bacterial metabolism of naphthalene: construction and use of recombinant bacteria to study ring cleavage of 1,2-dihydroxynaphthalene and subsequent reactionsQ24679821
Journal of General MicrobiologyQ27711489
Initial reactions in the oxidation of naphthalene by Pseudomonas putidaQ28285911
Mutagenicity of phenanthrene and phenanthrene K-region derivativesQ28325047
Stereoselective formation of a K-region dihydrodiol from phenanthrene by Streptomyces flavovirensQ28331652
Naphthalene degradation and incorporation of naphthalene-derived carbon into biomass by the thermophile Bacillus thermoleovoransQ28343887
nag genes of Ralstonia (formerly Pseudomonas) sp. strain U2 encoding enzymes for gentisate catabolismQ28345381
Direct ring fission of salicylate by a salicylate 1,2-dioxygenase activity from Pseudaminobacter salicylatoxidansQ28363537
Plasmid-encoded phthalate catabolic pathway in Arthrobacter keyseri 12BQ28365779
Actions of a versatile fluorene-degrading bacterial isolate on polycyclic aromatic compoundsQ28367389
Cloning and characterization of a chromosomal gene cluster, pah, that encodes the upper pathway for phenanthrene and naphthalene utilization by Pseudomonas putida OUS82Q28369631
Bacterial degradation of aromatic compoundsQ28754666
A new classification system for bacterial Rieske non-heme iron aromatic ring-hydroxylating oxygenasesQ28754758
Anaerobic catabolism of aromatic compounds: a genetic and genomic view.Q28755251
Complete and integrated pyrene degradation pathway in Mycobacterium vanbaalenii PYR-1 based on systems biologyQ28763612
Novel intermediates of acenaphthylene degradation by Rhizobium sp. strain CU-A1: evidence for naphthalene-1,8-dicarboxylic acid metabolismQ28767889
Oxidation of naphthenoaromatic and methyl-substituted aromatic compounds by naphthalene 1,2-dioxygenaseQ28768366
The broad substrate chlorobenzene dioxygenase and cis-chlorobenzene dihydrodiol dehydrogenase of Pseudomonas sp. strain P51 are linked evolutionarily to the enzymes for benzene and toluene degradationQ42556559
Genetic characterization and evolutionary implications of a chromosomally encoded naphthalene-degradation upper pathway from Pseudomonas stutzeri AN10.Q42607132
New classification system for oxygenase components involved in ring-hydroxylating oxygenationsQ42647393
Fluorene degradation by Sphingomonas sp. LB126 proceeds through protocatechuic acid: a genetic analysisQ42666429
Degradation of phenanthrene and anthracene by Nocardia otitidiscaviarum strain TSH1, a moderately thermophilic bacteriumQ43024180
Naphthalene metabolism in Nocardia otitidiscaviarum strain TSH1, a moderately thermophilic microorganismQ43024624
Enrichment, isolation, and phylogenetic identification of polycyclic aromatic hydrocarbon-degrading bacteria from Elizabeth River sedimentsQ43063963
Selection and identification of bacteria isolated from waste crude oil with polycyclic aromatic hydrocarbons removal capacities.Q43333291
Anaerobic biodegradation of naphthalene, phenanthrene, and biphenyl by a denitrifying enrichment cultureQ43547157
Effect of a complex environmental mixture from coal tar containing polycyclic aromatic hydrocarbons (PAH) on the tumor initiation, PAH-DNA binding and metabolic activation of carcinogenic PAH in mouse epidermisQ43641615
Marinobacter strain NCE312 has a Pseudomonas-like naphthalene dioxygenaseQ43668089
Biodegradation of polycyclic aromatic hydrocarbons by Sphingomonas strains isolated from the terrestrial subsurfaceQ43700492
Characterization of Rhodococcus opacus R7, a strain able to degrade naphthalene and o-xylene isolated from a polycyclic aromatic hydrocarbon-contaminated soilQ43769883
Metabolism of anthracene by a Rhodococcus speciesQ43781063
Anaerobic biodegradation of polycyclic aromatic hydrocarbon in soilQ44118262
Elucidation of the metabolic pathway of fluorene and cometabolic pathways of phenanthrene, fluoranthene, anthracene and dibenzothiophene by Sphingomonas sp. LB126.Q44410822
Naphthalene metabolism by pseudomonads: the oxidation of 1,2-dihydroxynaphthalene to 2-hydroxychromene-2-carboxylic acid and the formation of 2'-hydroxybenzalpyruvateQ44426913
Biodegradation of phenanthrene by Pseudomonas sp. strain PP2: novel metabolic pathway, role of biosurfactant and cell surface hydrophobicity in hydrocarbon assimilationQ44438985
Naphthalene-utilizing and mercury-resistant bacteria isolated from an acidic environmentQ44491978
Influence of peanut oil on microbial degradation of polycyclic aromatic hydrocarbonsQ44649333
Isolation and characterization of novel bacteria degrading polycyclic aromatic hydrocarbons from polluted Greek soilsQ44888637
Biochemical and molecular characterization of a ring fission dioxygenase with the ability to oxidize (substituted) salicylate(s) from Pseudaminobacter salicylatoxidansQ44954093
Isolation and characterization of polycyclic aromatic hydrocarbons-degrading Sphingomonas sp. strain ZL5.Q44959290
Complete nucleotide sequence and organization of the naphthalene catabolic plasmid pND6-1 from Pseudomonas sp. strain ND6.Q44972467
Effects of pH on the degradation of phenanthrene and pyrene by Mycobacterium vanbaalenii PYR-1.Q45183873
Proposal of the genus Sphingomonas sensu stricto and three new genera, Sphingobium, Novosphingobium and Sphingopyxis, on the basis of phylogenetic and chemotaxonomic analysesQ45314858
Metabolism of acenaphthylene via 1,2-dihydroxynaphthalene and catechol by Stenotrophomonas sp. RMSK.Q45959625
Role of surfactants in optimizing fluorene assimilation and intermediate formation by Rhodococcus rhodochrous VKM B-2469.Q46413950
Controlled release of nitrate and sulfate to enhance anaerobic bioremediation of phenanthrene in marine sedimentsQ46519392
Molecular characterization and substrate preference of a polycyclic aromatic hydrocarbon dioxygenase from Cycloclasticus sp. strain A5Q28776689
Evidence for a novel pathway in the degradation of fluorene by Pseudomonas sp. strain F274Q28776907
Evolution of functional diversity in the cupin superfamily.Q30167749
PAH-degradation by Paenibacillus spp. and description of Paenibacillus naphthalenovorans sp. nov., a naphthalene-degrading bacterium from the rhizosphere of salt marsh plantsQ30672418
Molecular detection and diversity of polycyclic aromatic hydrocarbon-degrading bacteria isolated from geographically diverse sitesQ30822409
Bacterial communities and enzyme activities of PAHs polluted soils.Q30835780
Cytochrome P450 enzymes in the generation of commercial productsQ31096798
Novosphingobium naphthalenivorans sp. nov., a naphthalene-degrading bacterium isolated from polychlorinated-dioxin-contaminated environmentsQ31129918
Identification of novel metabolites in the degradation of phenanthrene by Sphingomonas sp. strain P2.Q31440617
Vibrio cyclotrophicus sp. nov., a polycyclic aromatic hydrocarbon (PAH)-degrading marine bacteriumQ31870527
Identification, cloning, and characterization of a multicomponent biphenyl dioxygenase from Sphingobium yanoikuyae B1.Q33291513
Transmissible Plasmid Coding Early Enzymes of Naphthalene Oxidation in Pseudomonas putidaQ33784915
Functional and evolutionary relationships among diverse oxygenasesQ33972461
Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp. strain PYR-1.Q33989203
The electron-transport proteins of hydroxylating bacterial dioxygenasesQ34262625
Anaerobic biodegradation of saturated and aromatic hydrocarbonsQ34280270
Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sedimentsQ34318741
Metabolic activation of polycyclic and heterocyclic aromatic hydrocarbons and DNA damage: a reviewQ34427235
Polycyclic aromatic hydrocarbons: environmental pollution and bioremediationQ34635340
Non-heme iron-dependent dioxygenases: unravelling catalytic mechanisms for complex enzymatic oxidationsQ34745932
Metabolic diversity in aromatic compound utilization by anaerobic microbesQ34762748
Biodegradation aspects of polycyclic aromatic hydrocarbons (PAHs): a reviewQ34981017
Structural basis for regioselectivity and stereoselectivity of product formation by naphthalene 1,2-dioxygenaseQ35075667
Practical issues in the application of oxygenasesQ35101084
Genetics of Polycyclic Aromatic Hydrocarbon Metabolism in Diverse Aerobic BacteriaQ35120441
Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4Q35585218
Evolutionary relationships among extradiol dioxygenasesQ35614251
Biphenyl dioxygenases: functional versatilities and directed evolutionQ35855080
Process implementation aspects for biocatalytic hydrocarbon oxyfunctionalization.Q35893731
Molecular and biochemical characterization of 3-hydroxybenzoate 6-hydroxylase from Polaromonas naphthalenivorans CJ2.Q35946689
Mineralization of phenanthrene by a Mycobacterium spQ36069806
New naphthalene-degrading marine Pseudomonas strains.Q36094239
Degradation of fluorene by Brevibacterium sp. strain DPO 1361: a novel C-C bond cleavage mechanism via 1,10-dihydro-1,10-dihydroxyfluoren-9-oneQ36105100
Metabolism of naphthalene, fluorene, and phenanthrene: preliminary characterization of a cloned gene cluster from Pseudomonas putida NCIB 9816Q36106630
Oxidation of naphthalene by a multicomponent enzyme system from Pseudomonas sp. strain NCIB 9816.Q36310523
Naphthalene plasmids in pseudomonadsQ36310771
The ins and outs of ring-cleaving dioxygenases.Q36539821
Xenobiotic-metabolizing enzymes involved in activation and detoxification of carcinogenic polycyclic aromatic hydrocarbonsQ36583341
Role and regulation of the ortho and meta pathways of catechol metabolism in pseudomonads metabolizing naphthalene and salicylateQ36613111
Immunotoxic effects of chemicals: A matrix for occupational and environmental epidemiological studiesQ36621536
Bacterial oxidation of the polycyclic aromatic hydrocarbons acenaphthene and acenaphthyleneQ36686187
In situ bioremediationQ36797648
Bioremediation and monitoring of aromatic-polluted habitatsQ36836675
Diffuse PAH contamination of surface soils: environmental occurrence, bioavailability, and microbial degradationQ36861518
Enhanced bioremediation of polycyclic aromatic hydrocarbons by environmentally friendly techniquesQ37000468
Mechanism of extradiol aromatic ring-cleaving dioxygenasesQ37039723
Anaerobic metabolism of aromatic compoundsQ37124142
Microbial biodegradation of polyaromatic hydrocarbonsQ37228802
Anaerobic biodegradation of aromatic hydrocarbons: pathways and prospectsQ37236810
Biodiversity of polycyclic aromatic hydrocarbon-degrading bacteria from deep sea sediments of the Middle Atlantic RidgeQ37242869
Bioremediation: environmental clean-up through pathway engineeringQ37257166
Remediation of soils contaminated with polycyclic aromatic hydrocarbons (PAHs).Q37584819
Anaerobic degradation of polycyclic aromatic hydrocarbons.Q37588092
Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soilsQ38557399
Genotoxic potency in Drosophila melanogaster of selected aromatic amines and polycyclic aromatic hydrocarbons as assayed in the DNA repair testQ38573639
Isolation of marine polycyclic aromatic hydrocarbon (PAH)-degrading Cycloclasticus strains from the Gulf of Mexico and comparison of their PAH degradation ability with that of puget sound Cycloclasticus strainsQ39479468
Isolation and characterization of polycyclic aromatic hydrocarbon-degrading bacteria associated with the rhizosphere of salt marsh plantsQ39491286
Biochemical and genetic characterization of trans-2'-carboxybenzalpyruvate hydratase-aldolase from a phenanthrene-degrading Nocardioides strainQ39564677
Genetics of naphthalene catabolism in pseudomonadsQ39645190
P450 genes: structure, evolution, and regulationQ39664988
Degradation of anthracene by Mycobacterium sp. strain LB501T proceeds via a novel pathway, through o-phthalic acidQ39742875
Plasmid-mediated mineralization of naphthalene, phenanthrene, and anthracene.Q39857827
Naphthalene degradation via salicylate and gentisate by Rhodococcus sp. strain B4.Q39893952
Bacterial oxidation of naphthalene and phenanthreneQ39988582
Characterization of the upper pathway genes for fluorene metabolism in Terrabacter sp. strain DBF63.Q40001398
Phenanthrene-degrading phenotype of Alcaligenes faecalis AFK2.Q40069790
Oxygen activation by cytochrome P-450.Q40289289
The microbiology of coal. I. Bacterial oxidation of phenanthreneQ40312587
Environmental aspects of PAH biodegradationQ40374810
Oxygenase-catalyzed biological hydroxylationsQ40690254
The effect of dibenzo[a,1]pyrene and benzo[a]pyrene on human diploid lung fibroblasts: the induction of DNA adducts, expression of p53 and p21(WAF1) proteins and cell cycle distributionQ40842103
Oxidative metabolism of naphthalene by soil pseudomonads. The ring-fission mechanismQ42049423
OXIDATIVE METABOLISM OF PHENANTHRENE AND ANTHRACENE BY SOIL PSEUDOMONADS. THE RING-FISSION MECHANISM.Q42172460
Utilization of phthalate esters by micrococciQ42265137
A high-throughput screening method based on stably transformed human cells was used to determine the immunotoxic effects of fluoranthene and other PAHs.Q46628927
Degradation pathways of phenanthrene by Sinorhizobium sp. C4.Q46827572
Isolation and characterization of Pseudoalteromonas strains with divergent polycyclic aromatic hydrocarbon catabolic propertiesQ46846931
Degradation of phenanthrene by Burkholderia sp. C3: initial 1,2- and 3,4-dioxygenation and meta- and ortho-cleavage of naphthalene-1,2-diolQ46954795
Diversity among aromatic hydrocarbon-degrading bacteria and their meta-cleavage genesQ47777520
Conserved and hybrid meta-cleavage operons from PAH-degrading Burkholderia RP007.Q47937589
A novel degradation pathway in the assimilation of phenanthrene by Staphylococcus sp. strain PN/Y via meta-cleavage of 2-hydroxy-1-naphthoic acid: formation of trans-2,3-dioxo-5-(2'-hydroxyphenyl)-pent-4-enoic acid.Q48078611
Enzymatic and genetic profiles in environmental strains grown on polycyclic aromatic hydrocarbons.Q48083437
Novel upper meta-pathway extradiol dioxygenase gene diversity in polluted soilQ48084825
Anaerobic degradation of naphthalene by a pure culture of a novel type of marine sulphate-reducing bacteriumQ48380528
Genotoxic effects and chemical compositions of four creosotesQ50180893
Gentisate 1,2-dioxygenase from Xanthobacter polyaromaticivorans 127W.Q51085163
Nucleotide sequences and characterization of genes encoding naphthalene upper pathway of pseudomonas aeruginosa PaK1 and Pseudomonas putida OUS82.Q51336961
DNA adducts produced by oils, oil fractions and polycyclic aromatic hydrocarbons in relation to repair processes and skin carcinogenesis.Q53410166
Phenanthrene degradation in Arthrobacter sp. P1-1: initial 1,2-, 3,4- and 9,10-dioxygenation, and meta- and ortho-cleavages of naphthalene-1,2-diol after its formation from naphthalene-1,2-dicarboxylic acid and hydroxyl naphthoic acids.Q53617822
Bioremediation. An overviewQ55953070
Impact of the presence of salicylate or glucose on enzyme activity and phenanthrene degradation by Pseudomonas mendocinaQ57700074
Transposon and spontaneous deletion mutants of plasmid-borne genes encoding polycyclic aromatic hydrocarbon degradation by a strain of Pseudomonas fluorescensQ61827537
The Induction of the Enzymes of Naphthalene Metabolism in Pseudomonads by Salicylate and 2-AminobenzoateQ66959265
Identification of metabolites from degradation of naphthalene by a Mycobacterium spQ67529070
Fluorenone and 2-benzoylfluorenone: different short-term effects on drug-metabolizing liver enzymes and on cell proliferationQ67589278
Dihydrodiols from anthracene and phenanthreneQ67815839
Preliminary study on relationships among strains forming a bacterial community selected on naphthalene from a marine sedimentQ68623308
The configuration of the 1,2-dihydroxy-1,2-dihydronaphthalene formed in the bacterial metabolism of naphthaleneQ68629653
Isolation and characterization of (+)-1,1a-dihydroxy-1-hydrofluoren-9-one formed by angular dioxygenation in the bacterial catabolism of fluoreneQ70742127
Purification and characterisation of naphthalene oxygenase from Corynebacterium renaleQ71083159
Microbial degradation of the polycyclic aromatic hydrocarbons acenaphthene and acenaphthylene by a pure bacterial cultureQ72270745
Time-varying conjugation of 7,12-dimethylbenz[a]anthracene metabolites in rainbow trout (Oncorhynchus mykiss)Q72847326
Molecular characterization of Pseudomonas aeruginosa 2NR degrading naphthaleneQ73103139
Degradation of phenanthrene by different bacteria: evidence for novel transformation sequences involving the formation of 1-naphtholQ73381325
Bioremediation. Anaerobes to the rescueQ74420729
Characteristics of phenanthrene-degrading bacteria isolated from soils contaminated with polycyclic aromatic hydrocarbonsQ77604850
Anaerobic degradation of five polycyclic aromatic hydrocarbons from river sediment in TaiwanQ79427055
Sorption of polynuclear aromatic hydrocarbons by sediments and soilsQ83330381
P433issue1
P407language of work or nameEnglishQ1860
P921main subjectmetabolic pathwayQ68685
polycyclic aromatic hydrocarbonsQ407212
P304page(s)64-90
P577publication date2010-09-16
P1433published inCritical Reviews in MicrobiologyQ5186671
P1476titleRole of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: a review
Role of oxygenases in guiding diverse metabolic pathways in the bacterial degradation of low-molecular-weight polycyclic aromatic hydrocarbons: A review
P478volume37

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cites work (P2860)
Q34302711An insight into the origin and functional evolution of bacterial aromatic ring-hydroxylating oxygenases
Q51116742Biodegradation of Phenanthrene by Pseudomonas sp. JPN2 and Structure-Based Degrading Mechanism Study.
Q61443121Biodegradation of naphthalene, BTEX, and aliphatic hydrocarbons by Paraburkholderia aromaticivorans BN5 isolated from petroleum-contaminated soil
Q35203782Biodegradation of polycyclic aromatic hydrocarbons by Novosphingobium pentaromativorans US6-1.
Q64244820Cave Drip Water-Related Samples as a Natural Environment for Aromatic Hydrocarbon-Degrading Bacteria
Q37695518Complete Genome Sequence of Enterobacter sp. Strain ODB01, a Bacterium That Degrades Crude Oil.
Q28079210Current State of Knowledge in Microbial Degradation of Polycyclic Aromatic Hydrocarbons (PAHs): A Review
Q89003272Degradation of petroleum hydrocarbons and treatment of refinery wastewater under saline condition by a halophilic bacterial consortium enriched from marine environment (Red Sea), Jeddah, Saudi Arabia
Q37349665Evolution of Ubiquinone Biosynthesis: Multiple Proteobacterial Enzymes with Various Regioselectivities To Catalyze Three Contiguous Aromatic Hydroxylation Reactions.
Q47902604Formation of Developmentally Toxic Phenanthrene Metabolite Mixtures by Mycobacterium sp. ELW1.
Q92921919Insight Into the Microbial Co-occurrence and Diversity of 73 Grapevine (Vitis vinifera) Crown Galls Collected Across the Northern Hemisphere
Q92815856Metagenomic Insights into the Bacterial Functions of a Diesel-Degrading Consortium for the Rhizoremediation of Diesel-Polluted Soil
Q30371379Ring-Hydroxylating Oxygenase database: a database of bacterial aromatic ring-hydroxylating oxygenases in the management of bioremediation and biocatalysis of aromatic compounds.
Q37553223Thermophilic bacteria are potential sources of novel Rieske non-heme iron oxygenases

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