Improving performance of mammalian microRNA target prediction

scientific article

Improving performance of mammalian microRNA target prediction is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcbi/LiuYCGH10
P6179Dimensions Publication ID1014637491
P356DOI10.1186/1471-2105-11-476
P932PMC publication ID2955701
P698PubMed publication ID20860840
P5875ResearchGate publication ID46402884

P50authorShou-Jiang GaoQ41839530
P2093author name stringHui Liu
Yufei Huang
Yidong Chen
Dong Yue
P2860cites workSystematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundanceQ21090092
Principles of microRNA-target recognitionQ21146368
Human MicroRNA targetsQ21563637
Fast and effective prediction of microRNA/target duplexesQ24537313
MicroRNA targeting specificity in mammals: determinants beyond seed pairingQ24607724
The impact of microRNAs on protein outputQ24653549
miRecords: an integrated resource for microRNA-target interactionsQ24655642
miTarget: microRNA target gene prediction using a support vector machineQ24670005
MicroRNA targets in DrosophilaQ24806738
MicroInspector: a web tool for detection of miRNA binding sites in an RNA sequenceQ24812126
Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction methodQ24814166
Combinatorial microRNA target predictionsQ27860510
Widespread changes in protein synthesis induced by microRNAsQ27860886
MicroRNAs: genomics, biogenesis, mechanism, and functionQ27861070
The role of site accessibility in microRNA target recognitionQ29547436
A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexesQ29616620
A combined computational-experimental approach predicts human microRNA targetsQ29619021
Minimum redundancy feature selection from microarray gene expression dataQ30988046
Principles and limitations of computational microRNA gene and target findingQ36822487
The functions of herpesvirus-encoded microRNAsQ37035058
Revisiting the principles of microRNA target recognition and mode of actionQ37368876
An overview of the identification, detection, and functional analysis of Drosophila microRNAsQ38289138
Weighted sequence motifs as an improved seeding step in microRNA target prediction algorithmsQ43207380
Prediction of both conserved and nonconserved microRNA targets in animals.Q45964956
Naïve Bayes for microRNA target predictions--machine learning for microRNA targets.Q45965135
Computational identification of microRNA targets.Q52001642
From sequences to shapes and back: a case study in RNA secondary structures.Q52379672
A guide through present computational approaches for the identification of mammalian microRNA targetsQ61161512
P921main subjectmicroRNAQ310899
P304page(s)476
P577publication date2010-09-22
P1433published inBMC BioinformaticsQ4835939
P1476titleImproving performance of mammalian microRNA target prediction
P478volume11

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cites work (P2860)
Q33766581A Bayesian approach for identifying miRNA targets by combining sequence prediction and gene expression profiling
Q39292510A Kaposi's sarcoma-associated herpesvirus microRNA and its variants target the transforming growth factor β pathway to promote cell survival
Q45954268A new approach to human microRNA target prediction using ensemble pruning and rotation forest.
Q45949988A novel computational method for inferring competing endogenous interactions.
Q30679409A probabilistic approach to explore human miRNA targetome by integrating miRNA-overexpression data and sequence information
Q42013246An investigation into anti-proliferative effects of microRNAs encoded by the miR-106a-363 cluster on human carcinoma cells and keratinocytes using microarray profiling of miRNA transcriptomes
Q42326397Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match
Q27002723Common features of microRNA target prediction tools
Q38282622Comprehensive overview and assessment of computational prediction of microRNA targets in animals
Q53378101Computational Prediction of microRNA Targets.
Q38821616Computational and Experimental Identification of Tissue-Specific MicroRNA Targets.
Q36422259Context-specific microRNA analysis: identification of functional microRNAs and their mRNA targets
Q35776219DNA microarray integromics analysis platform
Q34976035Developing microRNA screening as a functional genomics tool for disease research
Q28539143Dysregulated miR-361-5p/VEGF axis in the plasma and endothelial progenitor cells of patients with coronary artery disease
Q30614377Gene regulation, modulation, and their applications in gene expression data analysis
Q35155627Identification of miR-145 targets through an integrated omics analysis.
Q35215871Identifying microRNA targets in different gene regions
Q89666216Improving Bioinformatics Prediction of microRNA Targets by Ranks Aggregation
Q35079842KSHV microRNAs mediate cellular transformation and tumorigenesis by redundantly targeting cell growth and survival pathways
Q28255832MBSTAR: multiple instance learning for predicting specific functional binding sites in microRNA targets
Q35901547MicroRNA-134 Contributes to Glucose-Induced Endothelial Cell Dysfunction and This Effect Can Be Reversed by Far-Infrared Irradiation
Q38119026MicroRNAs in farm animals
Q40824378Naïve Bayes classifier predicts functional microRNA target interactions in colorectal cancer.
Q26772303Non-coding yet non-trivial: a review on the computational genomics of lincRNAs
Q34182348Optimal use of conservation and accessibility filters in microRNA target prediction
Q90745788PIANO: A Web Server for Pseudouridine-Site (Ψ) Identification and Functional Annotation
Q21128766Predicting effective microRNA target sites in mammalian mRNAs
Q37488961Quantitative Proteomic Approach for MicroRNA Target Prediction Based on 18O/16O Labeling
Q35930516Single base mismatches in the mRNA target site allow specific seed region-mediated off-target binding of siRNA targeting human coagulation factor 7.
Q36379684The Limitations of Existing Approaches in Improving MicroRNA Target Prediction Accuracy
Q37464136The miR-125 family is an important regulator of the expression and maintenance of maternal effect genes during preimplantational embryo development
Q36028777TraceRNA: a web application for competing endogenous RNA exploration
Q35130693Transcriptional override: a regulatory network model of indirect responses to modulations in microRNA expression
Q56888438Trends in the development of miRNA bioinformatics tools
Q64230165WHISTLE: a high-accuracy map of the human N6-methyladenosine (m6A) epitranscriptome predicted using a machine learning approach
Q47120046mirDIP 4.1-integrative database of human microRNA target predictions.
Q34568135mirMark: a site-level and UTR-level classifier for miRNA target prediction

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