Detection and accurate identification of new or emerging bacteria in cystic fibrosis patients

scientific article published on July 1, 2010

Detection and accurate identification of new or emerging bacteria in cystic fibrosis patients is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1111/J.1469-0691.2010.03236.X
P953full work available at URLhttp://www.clinicalmicrobiologyandinfection.com/article/S1198743X14617341/pdf
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https://api.elsevier.com/content/article/PII:S1198743X14617341?httpAccept=text/plain
P698PubMed publication ID20880410
P5875ResearchGate publication ID46819734

P50authorFadi BittarQ49360813
Jean-Marc RolainQ34572450
P2860cites workChronic colonization with Pandoraea apista in cystic fibrosis patients determined by repetitive-element-sequence PCR.Q24544090
Identification and antimicrobial susceptibility of Alcaligenes xylosoxidans isolated from patients with cystic fibrosisQ24550797
Inquilinus limosus in patients with cystic fibrosis, GermanyQ24620282
Complex molecular epidemiology of methicillin-resistant staphylococcus aureus isolates from children with cystic fibrosis in the era of epidemic community-associated methicillin-resistant S aureusQ45411110
Microbial diversity in the sputum of a cystic fibrosis patient studied with 16S rDNA pyrosequencingQ45772438
Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis.Q46002328
Antibiotic-resistant obligate anaerobes during exacerbations of cystic fibrosis patientsQ46131950
Isolation of Nocardia species in patients with cystic fibrosisQ46686312
Increased mutability of Pseudomonas aeruginosa in biofilmsQ46767850
Use of 16S rRNA gene sequencing for identification of "Pseudomonas-like" isolates from sputum of patients with cystic fibrosisQ48126949
Use of the gyrB gene for the identification of Pandoraea speciesQ48309987
Molecular typing of the bacterial flora in sputum of cystic fibrosis patients.Q51653034
Nocardia asteroides isolated from three patients with cystic fibrosis.Q51720403
The effect of a bacteriophage on diversification of the opportunistic bacterial pathogen, Pseudomonas aeruginosa.Q53618798
Genome mosaicism is conserved but not unique in Pseudomonas aeruginosa isolates from the airways of young children with cystic fibrosis.Q53852065
[Phenotypic and genotypic characteristics of non fermenting atypical strains recovered from cystic fibrosis patients]Q53919111
Xanthomonas maltophilia misidentified as Pseudomonas cepacia in cultures of sputum from patients with cystic fibrosis: a diagnostic pitfall with major clinical implications.Q54182171
RISA-HPLC analysis of lung bacterial colonizers of cystic fibrosis children.Q54511897
Clonal analysis of Inquilinus limosus isolates from six cystic fibrosis patients and specific serum antibody response.Q54579124
Detection of Anaerobic Bacteria in High Numbers in Sputum from Patients with Cystic FibrosisQ57913654
Transcriptome analyses and biofilm-forming characteristics of a clonal Pseudomonas aeruginosa from the cystic fibrosis lungQ58056362
First report of Paenibacillus cineris from a patient with cystic fibrosisQ60454002
Persistent infection with small colony variant strains of Staphylococcus aureus in patients with cystic fibrosisQ74422423
Identification of Bordetella spp. in respiratory specimens from individuals with cystic fibrosisQ80832892
A 10-year large-scale cystic fibrosis carrier screening in the Italian populationQ84865297
A polymicrobial perspective of pulmonary infections exposes an enigmatic pathogen in cystic fibrosis patientsQ24652357
Bacterial activity in cystic fibrosis lung infectionsQ24813737
Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxideQ24816990
Cystic fibrosisQ28212180
Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosaQ28492507
Proteomic, microarray, and signature-tagged mutagenesis analyses of anaerobic Pseudomonas aeruginosa at pH 6.5, likely representing chronic, late-stage cystic fibrosis airway conditionsQ28492782
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patientsQ29615301
Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometryQ29616600
Lung infections associated with cystic fibrosisQ30080000
Bacterial strain typing in the genomic era.Q30377265
Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. novQ30695296
Advenella incenata gen. nov., sp. nov., a novel member of the Alcaligenaceae, isolated from various clinical samplesQ30980585
Modulation of Pseudomonas aeruginosa gene expression by host microflora through interspecies communication.Q31030261
Emerging and unusual gram-negative infections in cystic fibrosisQ31115361
First isolations of Segniliparus rugosus from patients with cystic fibrosisQ31120557
Molecular identification of bacteria in bronchoalveolar lavage fluid from children with cystic fibrosisQ33310144
Matrix-assisted laser desorption ionisation-time-of of-flight mass spectrometry of intact cells allows rapid identification of Burkholderia cepacia complexQ33351831
Molecular detection of multiple emerging pathogens in sputa from cystic fibrosis patientsQ33358120
Matrix-assisted laser desorption ionization-time of flight mass spectrometry for identification of nonfermenting gram-negative bacilli isolated from cystic fibrosis patientsQ33358344
Gene expression changes linked to antimicrobial resistance, oxidative stress, iron depletion and retained motility are observed when Burkholderia cenocepacia grows in cystic fibrosis sputumQ33370443
Discerning the complexity of community interactions using a Drosophila model of polymicrobial infectionsQ33379091
Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.Q33397958
Emergence of respiratory Streptococcus agalactiae isolates in cystic fibrosis patientsQ33413056
Studying bacteria in respiratory specimens by using conventional and molecular microbiological approachesQ33430526
Rapid identification of Burkholderia cepacia complex species including strains of the novel Taxon K, recovered from cystic fibrosis patients by intact cell MALDI-ToF mass spectrometryQ33454687
Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individualsQ33509530
Pseudomonas aeruginosa regulates flagellin expression as part of a global response to airway fluid from cystic fibrosis patientsQ33696479
Staphylococcus aureus serves as an iron source for Pseudomonas aeruginosa during in vivo cocultureQ33699922
PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patientsQ33715997
Pathogenicity of microbes associated with cystic fibrosisQ33807320
Metagenomic pyrosequencing and microbial identificationQ33944054
Capillary electrophoresis-single-strand conformation polymorphism analysis for rapid identification of Pseudomonas aeruginosa and other gram-negative nonfermenting bacilli recovered from patients with cystic fibrosisQ33963123
Clinical and microbiological features of Inquilinus sp. isolates from five patients with cystic fibrosis.Q34041641
Pseudomonas aeruginosa in cystic fibrosis: pathogenesis and persistenceQ34151362
Pneumonia due to Bordetella bronchiseptica in a cystic fibrosis patient: 16S rRNA sequencing for diagnosis confirmation.Q34197176
Nonmucoid Pseudomonas aeruginosa expresses alginate in the lungs of patients with cystic fibrosis and in a mouse model.Q34232085
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.Q34508854
Low rates of Pseudomonas aeruginosa misidentification in isolates from cystic fibrosis patientsQ34956792
Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosaQ35168460
Development of a diagnostic PCR assay that targets a heat-shock protein gene (groES) for detection of Pseudomonas spp. in cystic fibrosis patientsQ35196529
Laboratory aspects of management of chronic pulmonary infections in patients with cystic fibrosisQ35213050
Burkholderia pseudomallei: another emerging pathogen in cystic fibrosisQ35535652
Infection control in cystic fibrosisQ35545544
Bacterial diversity in cases of lung infection in cystic fibrosis patients: 16S ribosomal DNA (rDNA) length heterogeneity PCR and 16S rDNA terminal restriction fragment length polymorphism profiling.Q35638889
In vivo evidence of Pseudomonas aeruginosa nutrient acquisition and pathogenesis in the lungs of cystic fibrosis patientsQ36313798
Isolation of Lautropia mirabilis from sputa of a cystic fibrosis patientQ36544181
Pseudomonas aeruginosa chronic colonization in cystic fibrosis patientsQ36708763
Fourier transform infrared spectroscopy for rapid identification of nonfermenting gram-negative bacteria isolated from sputum samples from cystic fibrosis patientsQ36845344
16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfallsQ36878347
Cystic fibrosis: a polymicrobial infectious diseaseQ36895733
Misidentification of Pandoraea sputorum isolated from sputum of a patient with cystic fibrosis and review of Pandoraea species infections in transplant patientsQ36898168
Multicenter cross-sectional study of nontuberculous mycobacterial infections among cystic fibrosis patients, IsraelQ36944748
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patientsQ37033480
Burkholderia cepacia complex bacteria: opportunistic pathogens with important natural biologyQ37064461
Genomic analysis of an emerging multiresistant Staphylococcus aureus strain rapidly spreading in cystic fibrosis patients revealed the presence of an antibiotic inducible bacteriophageQ37069059
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencingQ37104903
Pseudomonas aeruginosa biofilms exposed to imipenem exhibit changes in global gene expression and beta-lactamase and alginate production.Q37119379
The Streptococcus milleri group--an unrecognized cause of disease in cystic fibrosis: a case series and literature reviewQ37126198
characterization of bacterial community diversity in cystic fibrosis lung infections by use of 16s ribosomal DNA terminal restriction fragment length polymorphism profilingQ37597340
Genome diversity of Pseudomonas aeruginosa isolates from cystic fibrosis patients and the hospital environmentQ37703045
Fluorescence in situ hybridization for rapid identification of Achromobacter xylosoxidans and Alcaligenes faecalis recovered from cystic fibrosis patientsQ38476154
Identification of members of the Burkholderia cepacia complex by species-specific PCR.Q39460070
Identification of Pandoraea species by 16S ribosomal DNA-based PCR assaysQ39467342
Comparison of isolation media for recovery of Burkholderia cepacia complex from respiratory secretions of patients with cystic fibrosisQ39467759
Use of 16S rRNA gene sequencing for identification of nonfermenting gram-negative bacilli recovered from patients attending a single cystic fibrosis center.Q39665032
Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patientsQ39697563
Microarray analysis of global gene expression in mucoid Pseudomonas aeruginosaQ39705810
Evaluation of MicroScan Autoscan for identification of Pseudomonas aeruginosa isolates from cystic fibrosis patientsQ39732748
Use of real-time PCR with multiple targets to identify Pseudomonas aeruginosa and other nonfermenting gram-negative bacilli from patients with cystic fibrosisQ39887228
Identification of Burkholderia cepacia isolates from patients with cystic fibrosis and use of a simple new selective mediumQ40013162
Microarray analysis reveals induction of lipoprotein genes in mucoid Pseudomonas aeruginosa: implications for inflammation in cystic fibrosis.Q40014245
In vitro analysis of tobramycin-treated Pseudomonas aeruginosa biofilms on cystic fibrosis-derived airway epithelial cellsQ40021908
Transcription of virulence factors in Staphylococcus aureus small-colony variants isolated from cystic fibrosis patients is influenced by SigB.Q40340234
Spread of beta-lactam-resistant Pseudomonas aeruginosa in a cystic fibrosis clinic.Q41091925
Use of 16S rRNA gene profiling by terminal restriction fragment length polymorphism analysis to compare bacterial communities in sputum and mouthwash samples from patients with cystic fibrosis.Q41481789
Superiority of molecular techniques for identification of gram-negative, oxidase-positive rods, including morphologically nontypical Pseudomonas aeruginosa, from patients with cystic fibrosisQ41819863
First isolation of two colistin-resistant emerging pathogens, Brevundimonas diminuta and Ochrobactrum anthropi, in a woman with cystic fibrosis: a case reportQ41896105
EuroCareCF quality assessment of diagnostic microbiology of cystic fibrosis isolatesQ41908042
Characterization of small-colony-variant Stenotrophomonas maltophilia isolated from the sputum specimens of five patients with cystic fibrosisQ41909591
Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosisQ41960504
Recovery of Herbaspirillum species from persons with cystic fibrosisQ41986091
Assessment of fluorescent in situ hybridization and PCR-based methods for rapid identification of Burkholderia cepacia complex organisms directly from sputum samples.Q42286592
Identification of isolates within the Burkholderia cepacia complex by a multiplex recA and 16S rRNA gene real-time PCR assayQ42909885
Infection by Ralstonia species in cystic fibrosis patients: identification of R. pickettii and R. mannitolilytica by polymerase chain reactionQ43065927
Ciprofloxacin and trimethoprim cause phage induction and virulence modulation in Staphylococcus aureusQ43181776
Inquilinus limosus and cystic fibrosisQ43230341
Acetobacter indonesiensis pneumonia after lung transplantQ43230349
Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patientsQ43447859
RecA gene sequence and Multilocus Sequence Typing for species-level resolution of Burkholderia cepacia complex isolatesQ43481176
Identification of Pseudomonas aeruginosa by a duplex real-time polymerase chain reaction assay targeting the ecfX and the gyrB genesQ44190265
Nocardia farcinica isolated from bronchoalveolar lavage fluid of a child with cystic fibrosisQ44290021
Chryseobacterium respiratory tract infections in patients with cystic fibrosisQ44851340
Misidentification of Burkholderia cepacia in US cystic fibrosis treatment centers: an analysis of 1,051 recent sputum isolatesQ45129729
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectcystic fibrosisQ178194
P304page(s)809-820
P577publication date2010-07-01
P1433published inClinical Microbiology and InfectionQ15757285
P1476titleDetection and accurate identification of new or emerging bacteria in cystic fibrosis patients
P478volume16

Reverse relations

cites work (P2860)
Q35897260A Novel Depsipeptide Produced by Paenibacillus alvei 32 Isolated from a Cystic fibrosis Patient
Q55040599A practical molecular identification of nonfermenting Gram-negative bacteria from cystic fibrosis.
Q34916610Analysis of changes in diversity and abundance of the microbial community in a cystic fibrosis patient over a multiyear period
Q38546468Animal models of polymicrobial pneumonia
Q35127881Assessment of airway microbiota and inflammation in cystic fibrosis using multiple sampling methods
Q26799417Bacteriophage-based therapy in cystic fibrosis-associated Pseudomonas aeruginosa infections: rationale and current status
Q37911731Bacteriophages as vehicles of the resistome in cystic fibrosis.
Q30388877Changes in cystic fibrosis airway microbial community associated with a severe decline in lung function
Q34536205Characterization and quantification of the fungal microbiome in serial samples from individuals with cystic fibrosis
Q34101572Clinical and microbiological features of a cystic fibrosis patient chronically colonized with Pandoraea sputorum identified by combining 16S rRNA sequencing and matrix-assisted laser desorption ionization-time of flight mass spectrometry
Q85110286Cystic fibrosis: deciphering the complexity
Q46495945Discriminating typical and atypical cystic fibrosis-related bacteria by multiplex PNA-FISH.
Q42268855Genome sequence of Microbacterium yannicii, a bacterium isolated from a cystic fibrosis patient
Q35074619High individuality of respiratory bacterial communities in a large cohort of adult cystic fibrosis patients under continuous antibiotic treatment
Q34706914Inflammation and airway microbiota during cystic fibrosis pulmonary exacerbations
Q38992886Insights into Cystic Fibrosis Polymicrobial Consortia: The Role of Species Interactions in Biofilm Development, Phenotype, and Response to In-Use Antibiotics
Q46277042Intravenous antibiotics reduce the presence of Aspergillus in adult cystic fibrosis sputum
Q43018827Lung biopsies for interstitial lung disease: the limits of the traditional methods of microbiological identification
Q35922452Metagenomic Sequencing of the Chronic Obstructive Pulmonary Disease Upper Bronchial Tract Microbiome Reveals Functional Changes Associated with Disease Severity
Q35124580Microbiome in cystic fibrosis: Shaping polymicrobial interactions for advances in antibiotic therapy.
Q31152913Microbiota present in cystic fibrosis lungs as revealed by whole genome sequencing
Q34982856Modern clinical microbiology: new challenges and solutions
Q38080967Molecular detection of CF lung pathogens: current status and future potential
Q41684286Pandoraea pulmonicola chronic colonization in a cystic fibrosis patient, France
Q34705295Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France
Q40043995Phylogenetic Analysis and Antimicrobial Profiles of Cultured Emerging Opportunistic Pathogens (Phyla Actinobacteria and Proteobacteria) Identified in Hot Springs.
Q35905382Polyphasic characterisation of Burkholderia cepaciacomplex species isolated from children with cystic fibrosis
Q36152854Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability
Q36063996Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline
Q55444974Quantitative assessment of individual populations within polymicrobial biofilms.
Q55664083Rapid detection of four non-fermenting Gram-negative bacteria directly from cystic fibrosis patient's respiratory samples on the BD MAX™ system.
Q41822066Rapid identification of Stenotrophomonas maltophilia by peptide nucleic acid fluorescence in situ hybridization
Q33770039Reliability of quantitative real-time PCR for bacterial detection in cystic fibrosis airway specimens
Q35861377The cystic fibrosis microbiome in an ecological perspective and its impact in antibiotic therapy

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