| review article | Q7318358 |
| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1085558821 |
| P356 | DOI | 10.1186/S13059-017-1236-9 |
| P932 | PMC publication ID | 5440935 |
| P698 | PubMed publication ID | 28535770 |
| P50 | author | Crisanto Gutierrez | Q49396424 |
| Zaida Vergara | Q55294280 | ||
| P2860 | cites work | The B73 Maize Genome: Complexity, Diversity, and Dynamics | Q22065899 |
| Analysis of the genome sequence of the flowering plant Arabidopsis thaliana | Q22122387 | ||
| Nascent chromatin capture proteomics determines chromatin dynamics during DNA replication and identifies unknown fork components | Q24338173 | ||
| Mechanisms Used by Plants to Cope with DNA Damage | Q38665101 | ||
| Protecting DNA from errors and damage: an overview of DNA repair mechanisms in plants compared to mammals | Q38779950 | ||
| Links of genome replication, transcriptional silencing and chromatin dynamics | Q38798214 | ||
| Put your 3D glasses on: plant chromatin is on show. | Q38821202 | ||
| Compartmentalization of DNA Damage Response between Heterochromatin and Euchromatin Is Mediated by Distinct H2A Histone Variants. | Q38845597 | ||
| Genome-Wide Analysis of the Distinct Types of Chromatin Interactions in Arabidopsis thaliana | Q39033913 | ||
| The LINC complex contributes to heterochromatin organisation and transcriptional gene silencing in plants. | Q39042172 | ||
| The connection between BRG1, CTCF and topoisomerases at TAD boundaries | Q39070500 | ||
| R-loops and initiation of DNA replication in human cells: a missing link? | Q40009006 | ||
| Exogenous Transposable Elements Circumvent Identity-Based Silencing, Permitting the Dissection of Expression-Dependent Silencing. | Q40337572 | ||
| Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution. | Q40377230 | ||
| DNA methylation epigenetically silences crossover hot spots and controls chromosomal domains of meiotic recombination in Arabidopsis | Q40400277 | ||
| Quantitative Proteomics Analysis of Developmental Reprogramming in Protoplasts of the Moss Physcomitrella patens. | Q40460376 | ||
| Chromatin Controls DNA Replication Origin Selection, Lagging-Strand Synthesis, and Replication Fork Rates | Q41072300 | ||
| Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation | Q41737028 | ||
| Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. | Q41807998 | ||
| Characterization of histone modifications associated with DNA damage repair genes upon exposure to gamma rays in Arabidopsis seedlings | Q42358779 | ||
| A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization | Q42733263 | ||
| Genome-wide analysis of local chromatin packing in Arabidopsis thaliana. | Q43129173 | ||
| EARLY IN SHORT DAYS 7 (ESD7) encodes the catalytic subunit of DNA polymerase epsilon and is required for flowering repression through a mechanism involving epigenetic gene silencing | Q43233611 | ||
| ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase | Q44277312 | ||
| Epigenetic regulation, somatic homologous recombination, and abscisic acid signaling are influenced by DNA polymerase epsilon mutation in Arabidopsis | Q46108770 | ||
| The Functional Topography of the Arabidopsis Genome Is Organized in a Reduced Number of Linear Motifs of Chromatin States | Q46254742 | ||
| Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana | Q46792395 | ||
| Interactions between the cell cycle and embryonic patterning in Arabidopsis uncovered by a mutation in DNA polymerase epsilon. | Q46797172 | ||
| Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis | Q47987433 | ||
| Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation | Q48146967 | ||
| The Second Subunit of DNA Polymerase Delta Is Required for Genomic Stability and Epigenetic Regulation | Q48226741 | ||
| Gene-body chromatin modification dynamics mediate epigenome differentiation in Arabidopsis | Q48338509 | ||
| A high-resolution root spatiotemporal map reveals dominant expression patterns. | Q50659214 | ||
| Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. | Q50727146 | ||
| The Arabidopsis SWR1 chromatin-remodeling complex is important for DNA repair, somatic recombination, and meiosis. | Q50895810 | ||
| The catalytic subunit of Arabidopsis DNA polymerase α ensures stable maintenance of histone modification. | Q50928475 | ||
| Chromatin Constrains the Initiation and Elongation of DNA Replication. | Q51003935 | ||
| Distinct roles of the histone chaperones NAP1 and NRP and the chromatin-remodeling factor INO80 in somatic homologous recombination in Arabidopsis thaliana. | Q51276170 | ||
| DNA DAMAGE BINDING PROTEIN 2 (DDB2) Shapes the DNA Methylation Landscape. | Q51567610 | ||
| Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila. | Q52777631 | ||
| Dynamics of plant histone modifications in response to DNA damage. | Q52843708 | ||
| The Smc5-Smc6 complex and SUMO modification of Rad52 regulates recombinational repair at the ribosomal gene locus. | Q53539192 | ||
| Distinct modes of DNA accessibility in plant chromatin | Q57831457 | ||
| ddm1 plants are sensitive to methyl methane sulfonate and NaCl stresses and are deficient in DNA repair | Q84005805 | ||
| Integrative epigenomic mapping defines four main chromatin states in Arabidopsis | Q24632836 | ||
| Regulation of chromatin by histone modifications | Q24635070 | ||
| DNA methylation pathways and their crosstalk with histone methylation | Q26795714 | ||
| Large-scale chromatin organization: the good, the surprising, and the still perplexing | Q26830921 | ||
| Nucleotide excision repair in eukaryotes | Q26850656 | ||
| Every amino acid matters: essential contributions of histone variants to mammalian development and disease | Q27008522 | ||
| Role of the Polymerase ϵ sub-unit DPB2 in DNA replication, cell cycle regulation and DNA damage response in Arabidopsis. | Q27323204 | ||
| Arabidopsis DNA polymerase ϵ recruits components of Polycomb repressor complex to mediate epigenetic gene silencing. | Q27324008 | ||
| Selective Methylation of Histone H3 Variant H3.1 Regulates Heterochromatin Replication | Q27682182 | ||
| A bivalent chromatin structure marks key developmental genes in embryonic stem cells | Q27860977 | ||
| Moving through the Stressed Genome: Emerging Regulatory Roles for Transposons in Plant Stress Response | Q28079618 | ||
| Comprehensive mapping of long-range interactions reveals folding principles of the human genome | Q28131819 | ||
| Capturing chromosome conformation | Q28201750 | ||
| Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements | Q28262061 | ||
| Topological domains in mammalian genomes identified by analysis of chromatin interactions | Q28264221 | ||
| Histone H1 and its isoforms: contribution to chromatin structure and function | Q28303037 | ||
| Structural and functional analysis of novel human cytochrome C targets in apoptosis | Q28387284 | ||
| New Arabidopsis thaliana cytochrome c partners: a look into the elusive role of cytochrome c in programmed cell death in plants | Q28392802 | ||
| DNA methyltransferases are required to induce heterochromatic re-replication in Arabidopsis | Q28480986 | ||
| Mapping and analysis of chromatin state dynamics in nine human cell types | Q29547552 | ||
| Discovery and characterization of chromatin states for systematic annotation of the human genome | Q29614411 | ||
| Spatial partitioning of the regulatory landscape of the X-inactivation centre | Q29614999 | ||
| Highly integrated single-base resolution maps of the epigenome in Arabidopsis | Q29616098 | ||
| Role of transposable elements in heterochromatin and epigenetic control | Q29616253 | ||
| The Interplay of Chromatin Landscape and DNA-Binding Context Suggests Distinct Modes of EIN3 Regulation in Arabidopsis thaliana. | Q30313517 | ||
| Circular chromosome conformation capture (4C) uncovers extensive networks of epigenetically regulated intra- and interchromosomal interactions. | Q33260024 | ||
| INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana. | Q33344620 | ||
| Mutation in the catalytic subunit of DNA polymerase alpha influences transcriptional gene silencing and homologous recombination in Arabidopsis | Q33347870 | ||
| Genome-wide analyses for dissecting gene regulatory networks in the shoot apical meristem | Q33362721 | ||
| ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome | Q33377433 | ||
| Histone chaperone activity of Arabidopsis thaliana NRP1 is blocked by cytochrome c | Q33558339 | ||
| The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin | Q33670594 | ||
| Epigenome Maintenance in Response to DNA Damage | Q33811644 | ||
| Requirement for flap endonuclease 1 (FEN1) to maintain genomic stability and transcriptional gene silencing in Arabidopsis | Q33900874 | ||
| H3K9 methylation extends across natural boundaries of heterochromatin in the absence of an HP1 protein | Q36380674 | ||
| Autotetraploid rice methylome analysis reveals methylation variation of transposable elements and their effects on gene expression | Q36394356 | ||
| Composition and formation of heterochromatin in Arabidopsis thaliana. | Q36408598 | ||
| CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize | Q36732449 | ||
| Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA | Q36970371 | ||
| Position-effect variegation, heterochromatin formation, and gene silencing in Drosophila | Q37040262 | ||
| DDM1 and ROS1 have a role in UV-B induced- and oxidative DNA damage in A. thaliana. | Q37240736 | ||
| Long non-coding RNA produced by RNA polymerase V determines boundaries of heterochromatin. | Q37365571 | ||
| ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. | Q37368327 | ||
| Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana | Q37420457 | ||
| Large-scale heterochromatin remodeling linked to overreplication-associated DNA damage | Q37589864 | ||
| The coupling of epigenome replication with DNA replication | Q37828293 | ||
| Germline specification and function in plants. | Q37844559 | ||
| Histone chaperones: assisting histone traffic and nucleosome dynamics | Q38218235 | ||
| Histone H3 dynamics in plant cell cycle and development. | Q38233809 | ||
| Keeping the gate closed: functions of the polycomb repressive complex PRC2 in development. | Q38374393 | ||
| Interphase chromatin organisation in Arabidopsis nuclei: constraints versus randomness. | Q38463826 | ||
| Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes | Q38476920 | ||
| DNA Damage Repair in the Context of Plant Chromatin. | Q38531882 | ||
| Silencing of active transposable elements in plants | Q38545318 | ||
| Genome architecture: from linear organisation of chromatin to the 3D assembly in the nucleus | Q38578607 | ||
| Accessing the Inaccessible: The Organization, Transcription, Replication, and Repair of Heterochromatin in Plants | Q38657331 | ||
| Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. | Q33921275 | ||
| RNA polymerase IV directs silencing of endogenous DNA. | Q33984841 | ||
| Heritable individual-specific and allele-specific chromatin signatures in humans | Q34087197 | ||
| Systematic protein location mapping reveals five principal chromatin types in Drosophila cells | Q34141226 | ||
| Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases. | Q34242051 | ||
| Three-dimensional folding and functional organization principles of the Drosophila genome | Q34248756 | ||
| Chromatin replication and epigenome maintenance | Q34256428 | ||
| Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome | Q34263130 | ||
| Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data | Q34343663 | ||
| Noncoding RNAs and the borders of heterochromatin | Q34389118 | ||
| Three-dimensional genome architecture: players and mechanisms | Q34466522 | ||
| Spreading of heterochromatin is limited to specific families of maize retrotransposons | Q34524725 | ||
| On TADs and LADs: Spatial Control Over Gene Expression. | Q34531125 | ||
| Broad chromosomal domains of histone modification patterns in C. elegans | Q34548272 | ||
| DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases. | Q34598249 | ||
| Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes | Q34881670 | ||
| ARGONAUTE 6 bridges transposable element mRNA-derived siRNAs to the establishment of DNA methylation | Q34924007 | ||
| Epigenetic modifications in plants: an evolutionary perspective | Q34989744 | ||
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster | Q35030499 | ||
| Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis | Q35141855 | ||
| Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis | Q35198398 | ||
| Genomic distribution of H3K9me2 and DNA methylation in a maize genome | Q35224770 | ||
| Heat-induced release of epigenetic silencing reveals the concealed role of an imprinted plant gene | Q35439113 | ||
| The arabidopsis DNA polymerase δ has a role in the deposition of transcriptionally active epigenetic marks, development and flowering. | Q35563573 | ||
| Light signaling controls nuclear architecture reorganization during seedling establishment. | Q35669395 | ||
| A decade of 3C technologies: insights into nuclear organization | Q35674570 | ||
| Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana | Q35887070 | ||
| Structural basis for inhibition of the histone chaperone activity of SET/TAF-Iβ by cytochrome c. | Q35961467 | ||
| Chromatin in 3D: progress and prospects for plants | Q35986660 | ||
| Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana. | Q36038151 | ||
| LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome. | Q36075422 | ||
| RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome | Q36331974 | ||
| The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis | Q36352391 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P433 | issue | 1 | |
| P921 | main subject | cell | Q7868 |
| eukaryote | Q19088 | ||
| DNA repair | Q210538 | ||
| regulation of gene expression | Q411391 | ||
| nucleoprotein | Q419245 | ||
| post-translational protein modification | Q898362 | ||
| P304 | page(s) | 96 | |
| P577 | publication date | 2017-05-23 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | Emerging roles of chromatin in the maintenance of genome organization and function in plants | |
| P478 | volume | 18 |
| Q64271548 | Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination |
| Q92825167 | Chromatin Remodeling and Epigenetic Regulation in Plant DNA Damage Repair |
| Q92205951 | Differences in firing efficiency, chromatin, and transcription underlie the developmental plasticity of the Arabidopsis DNA replication origins |
| Q55129542 | Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns. |
| Q89126426 | Light and temperature shape nuclear architecture and gene expression |
| Q92480767 | Linker histones are fine-scale chromatin architects modulating developmental decisions in Arabidopsis |
| Q52332500 | Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularity. |
| Q48186177 | Not just gene expression: 3D implications of chromatin modifications during sexual plant reproduction |
| Q90384164 | Plant DNA Polymerases |
| Q90386868 | Sex and the flower - developmental aspects of sex chromosome evolution |
| Q92381340 | The m6A pathway protects the transcriptome integrity by restricting RNA chimera formation in plants |
| Q91899008 | The plant mobile domain proteins MAIN and MAIL1 interact with the phosphatase PP7L to regulate gene expression and silence transposable elements in Arabidopsis thaliana |
| Q57173220 | Three-dimensional chromatin packing and positioning of plant genomes |
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