Complementary proteome and transcriptome profiling in developing grains of a notched-belly rice mutant reveals key pathways involving in chalkiness formation

scientific article

Complementary proteome and transcriptome profiling in developing grains of a notched-belly rice mutant reveals key pathways involving in chalkiness formation is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/PCP/PCX001
P932PMC publication ID5444571
P698PubMed publication ID28158863

P2093author name stringYanfeng Ding
Shaohua Wang
Xincheng Zhang
Ganghua Li
Zhenghui Liu
Zhaomiao Lin
Zunxin Wang
P2860cites workRegulation of Arabidopsis embryo and endosperm development by the polypeptide signaling molecule CLE8.Q42503622
Reducing rice seed storage protein accumulation leads to changes in nutrient quality and storage organelle formationQ42861049
Analysis of the rice mitochondrial carrier family reveals anaerobic accumulation of a basic amino acid carrier involved in arginine metabolism during seed germinationQ42933579
FLOURY ENDOSPERM6 encodes a CBM48 domain-containing protein involved in compound granule formation and starch synthesis in rice endospermQ43463281
A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endospermQ43707431
Nitrogen-Sparing Mechanisms in Chlamydomonas Affect the Transcriptome, the Proteome, and Photosynthetic Metabolism.Q45934490
Chalk5 encodes a vacuolar H(+)-translocating pyrophosphatase influencing grain chalkiness in riceQ46108877
Proteomic analysis of the expression of proteins related to rice quality during caryopsis development and the effect of high temperature on expressionQ46456020
Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedlingQ46563567
Profiling the expression of genes controlling rice grain qualityQ46746178
OsVPS9A functions cooperatively with OsRAB5A to regulate post-Golgi dense vesicle-mediated storage protein trafficking to the protein storage vacuole in rice endosperm cellsQ48039165
Control of rice grain-filling and yield by a gene with a potential signature of domesticationQ48072921
Characterization of SSIIIa-deficient mutants of rice: the function of SSIIIa and pleiotropic effects by SSIIIa deficiency in the rice endospermQ48078681
A bZIP protein, VIP1, is a regulator of osmosensory signaling in Arabidopsis.Q50500055
Structural and physiological characterization during wheat pericarp development.Q50747336
Proteomic and transcriptomic analysis of rice mature seed-derived callus differentiation.Q51992665
Comparative proteomic study on Brassica hexaploid and its parents provides new insights into the effects of polyploidization.Q53160332
Significant Accumulation of C4-Specific Pyruvate, Orthophosphate Dikinase in a C3 Plant, RiceQ56003432
Suppression of α-amylase genes improves quality of rice grain ripened under high temperatureQ61762850
Identification of stable QTLs causing chalk in rice grains in nine environmentsQ62775070
The structure of starch can be manipulated by changing the expression levels of starch branching enzyme IIb in rice endospermQ79406975
Comprehensive expression profiling of rice grain filling-related genes under high temperature using DNA microarrayQ80033168
Survey of differentially expressed proteins and genes in jasmonic acid treated rice seedling shoot and root at the proteomics and transcriptomics levelsQ80823721
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Designing climate-resilient rice with ideal grain quality suited for high-temperature stressQ26995709
Current perspectives on the hormonal control of seed development in Arabidopsis and maize: a focus on auxinQ27022284
SOAP2: an improved ultrafast tool for short read alignmentQ28247469
Significant accumulation of C(4)-specific pyruvate, orthophosphate dikinase in a C(3) plant, riceQ28363914
Chalky part differs in chemical composition from translucent part of japonica rice grains as revealed by a notched-belly mutant with white-bellyQ28822506
The significance of digital gene expression profilesQ29614357
KAAS: an automatic genome annotation and pathway reconstruction serverQ29617232
Climate change: implications for the yield of edible riceQ30649973
A new rice zinc-finger protein binds to the O2S box of the alpha-amylase gene promoterQ30833395
Rice chalky ring formation caused by temporal reduction in starch biosynthesis during osmotic adjustment under foehn-induced dry windQ30862890
Strategies for developing Green Super RiceQ33301998
Ectopic expression of rice OsMADS1 reveals a role in specifying the lemma and palea, grass floral organs analogous to sepalsQ33335769
Dynamic proteomic analysis reveals a switch between central carbon metabolism and alcoholic fermentation in rice filling grainsQ33364365
Transcriptome analysis of grain-filling caryopses reveals involvement of multiple regulatory pathways in chalky grain formation in riceQ33782300
Proteomic analysis of proteins related to rice grain chalkiness using iTRAQ and a novel comparison system based on a notched-belly mutant with white-belly.Q33811588
Atlas of rice grain filling-related metabolism under high temperature: joint analysis of metabolome and transcriptome demonstrated inhibition of starch accumulation and induction of amino acid accumulationQ33853429
Different effects of night versus day high temperature on rice quality and accumulation profiling of rice grain proteins during grain fillingQ33893994
Genetic analysis of cysteine-poor prolamin polypeptides reduced in the endosperm of the rice esp1 mutantQ33935695
A role for the cysteine-rich 10 kDa prolamin in protein body I formation in riceQ35033638
Identification of genomic regions and the isoamylase gene for reduced grain chalkiness in riceQ35581493
The failure to express a protein disulphide isomerase-like protein results in a floury endosperm and an endoplasmic reticulum stress response in riceQ35632225
Complementary proteome and transcriptome profiling in phosphate-deficient Arabidopsis roots reveals multiple levels of gene regulation.Q36386941
Inactivation of the UGPase1 gene causes genic male sterility and endosperm chalkiness in rice (Oryza sativa L.).Q36575466
OsbZIP58, a basic leucine zipper transcription factor, regulates starch biosynthesis in rice endospermQ37069245
Omics meet networks - using systems approaches to infer regulatory networks in plantsQ37663075
A few standing for many: embryo receptor-like kinases.Q37846976
Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endospermQ38338122
Coexpression analysis identifies Rice Starch Regulator1, a rice AP2/EREBP family transcription factor, as a novel rice starch biosynthesis regulatorQ38341621
Three novel alleles of FLOURY ENDOSPERM2 (FLO2) confer dull grains with low amylose content in rice.Q39035758
Overexpression of OsCOIN, a putative cold inducible zinc finger protein, increased tolerance to chilling, salt and drought, and enhanced proline level in riceQ39183950
A lipid transfer protein, OsLTPL36, is essential for seed development and seed quality in riceQ40510223
Proteomics of rice grain under high temperature stressQ41545383
P577publication date2017-01-31
P1433published inPlant and Cell PhysiologyQ2402845
P1476titleComplementary proteome and transcriptome profiling in developing grains of a notched-belly rice mutant reveals key pathways involving in chalkiness formation

Reverse relations

cites work (P2860)
Q89782763Cuminal Inhibits Trichothecium roseum Growth by Triggering Cell Starvation: Transcriptome and Proteome Analysis
Q98564861Exogenous proline induces regulation in 2-acetyl-1-pyrroline (2-AP) biosynthesis and quality characters in fragrant rice (Oryza sativa L.).
Q90429737Integrated analysis of quantitative proteome and transcriptional profiles reveals abnormal gene expression and signal pathway in bladder cancer
Q92558045iTRAQ proteomics reveals the regulatory response to Magnaporthe oryzae in durable resistant vs. susceptible rice genotypes
Q92710216iTRAQ-based quantitative analysis reveals proteomic changes in Chinese cabbage (Brassica rapa L.) in response to Plasmodiophora brassicae infection

Search more.