| scholarly article | Q13442814 |
| P50 | author | Clifford W. Cunningham | Q45333244 |
| P2093 | author name string | J J Bull | |
| J P Huelsenbeck | |||
| P433 | issue | 4 | |
| P921 | main subject | phylogenetics | Q171184 |
| P1104 | number of pages | 7 | |
| P304 | page(s) | 152-158 | |
| P577 | publication date | 1996-04-01 | |
| P1433 | published in | Trends in Ecology & Evolution | Q15265725 |
| P1476 | title | Combining data in phylogenetic analysis | |
| P478 | volume | 11 |
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| Q37109854 | A hierarchical model for incomplete alignments in phylogenetic inference |
| Q33714988 | A maximum pseudo-likelihood approach for estimating species trees under the coalescent model |
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| Q111622544 | A molecular characterization of Cercospora species pathogenic to water hyacinth and emendation of C. piaropi |
| Q38432483 | A multigene species tree for Western Mediterranean painted frogs (Discoglossus). |
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| Q30855728 | A phylogenetic study of Dothiorella and Spencermartinsia species associated with woody plants in Iran, New Zealand, Portugal and Spain |
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| Q30711554 | A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mitochondrial DNA sequences |
| Q24200988 | A revision of Chilicola (Heteroediscelis), a subgenus of xeromelissine bees (Hymenoptera, Colletidae) endemic to Chile: taxonomy, phylogeny, and biogeography, with descriptions of eight new species |
| Q42928752 | A robust phylogenetic framework for the bacterial genus Photorhabdus and its use in studying the evolution and maintenance of bioluminescence: a case for 16S, gyrB, and glnA. |
| Q57053118 | A serious canker disease caused byImmersiporthe knoxdaviesianagen. et sp. nov. (Cryphonectriaceae) on nativeRapanea melanophloeosin South Africa |
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| Q56975259 | Building trees of algae: some advances in phylogenetic and evolutionary analysis |
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| Q24683591 | Celoporthe dispersa gen. et sp. nov. from native Myrtales in South Africa |
| Q56931719 | Characterization of Botryosphaeriaceae from plantation-grown Eucalyptus species in South China |
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| Q28649717 | Circumstances in which parsimony but not compatibility will be provably misleading |
| Q40763350 | Cladistic analysis of myxozoan species with known alternating life-cycles |
| Q28757486 | Clouded leopard phylogeny revisited: support for species recognition and population division between Borneo and Sumatra |
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| Q33767904 | Combined multiple gene genealogies and phenotypic characters differentiate several species previously identified as Botryosphaeria dothidea. |
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| Q30748204 | Combining multiple data sets in a likelihood analysis: which models are the best? |
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| Q33393251 | Comparison of methods for species-tree inference in the sawfly genus Neodiprion (Hymenoptera: Diprionidae). |
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| Q30919244 | Conflicting phylogenies of balsaminoid families and the polytomy in Ericales: combining data in a Bayesian framework |
| Q34933717 | Constructing phylogenies in the presence of intra-individual site polymorphisms (2ISPs) with a focus on the nuclear ribosomal cistron. |
| Q34543114 | Continental diversification of an African catfish radiation (Mochokidae: Synodontis). |
| Q33845478 | Contributions of plant molecular systematics to studies of molecular evolution |
| Q41754342 | Cospeciation between bacterial endosymbionts (Buchnera) and a recent radiation of aphids (Uroleucon) and pitfalls of testing for phylogenetic congruence |
| Q33341342 | Cowpea and peanut in southern Africa are nodulated by diverse Bradyrhizobium strains harboring nodulation genes that belong to the large pantropical clade common in Africa |
| Q35680920 | Cryptic speciation and recombination in the aflatoxin-producing fungus Aspergillus flavus |
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| Q46063305 | Defining the limits of taxonomic conservatism in host-plant use for phytophagous insects: molecular systematics and evolution of host-plant associations in the seed-beetle genus Bruchus Linnaeus (Coleoptera: Chrysomelidae: Bruchinae). |
| Q28660296 | Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data |
| Q30659115 | Digenean parasites of deep-sea teleosts: a review and case studies of intrageneric phylogenies |
| Q30633230 | Diplodia quercivora sp. nov.: a new species of Diplodia found on declining Quercus canariensis trees in Tunisia. |
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| Q30671469 | Diversification of Scrophularia (Scrophulariaceae) in the Western Mediterranean and Macaronesia--phylogenetic relationships, reticulate evolution and biogeographic patterns |
| Q45797095 | Diversification of the North American shrub genus Ceanothus (Rhamnaceae): conflicting phylogenies from nuclear ribosomal DNA and chloroplast DNA. |
| Q41771219 | Diversity and evolution of the phenazine biosynthesis pathway |
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| Q111629653 | Evaluating character partitioning and molecular models in plastid phylogenomics at low taxonomic levels: A case study using Amphilophium (Bignonieae, Bignoniaceae) |
| Q35165980 | Evaluating phylogenetic congruence in the post-genomic era |
| Q28748928 | Evolution and ecophysiology of the industrial producer Hypocrea jecorina (Anamorph Trichoderma reesei) and a new sympatric agamospecies related to it |
| Q47972936 | Evolution, biogeography, and the utility of mitochondrial 16s and COI genes in phylogenetic analysis of the crab genus Austinixa (Decapoda: Pinnotheridae). |
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| Q24678641 | Exhaustive sample set among Viverridae reveals the sister-group of felids: the linsangs as a case of extreme morphological convergence within Feliformia |
| Q31019862 | Expanded phylogenetic analyses of the class Heterotrichea (Ciliophora, Postciliodesmatophora) using five molecular markers and morphological data |
| Q35171472 | Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab |
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| Q58266971 | Genetic distinctiveness of the greater long-tailed hamster,Tscherskia triton nestor(Rodentia: Mammalia), from Jeju Island, Korea: cytochrome oxidase I and cytochromebsequence analyses |
| Q33466055 | Genetic diversity of the Cryptococcus species complex suggests that Cryptococcus gattii deserves to have varieties. |
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| Q34625058 | Genome-wide investigation reveals high evolutionary rates in annual model plants |
| Q21135245 | Genotyping of Capreolus pygargus fossil DNA from Denisova cave reveals phylogenetic relationships between ancient and modern populations |
| Q46456485 | High genetic diversity of Vibrio cholerae in the European lake Neusiedler See is associated with intensive recombination in the reed habitat and the long-distance transfer of strains |
| Q24643849 | Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion |
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| Q47667360 | Horned lizard (Phrynosoma) phylogeny inferred from mitochondrial genes and morphological characters: understanding conflicts using multiple approaches |
| Q59393739 | Hybridization and the phylogenetic relationship between polecats and domestic ferrets in Britain |
| Q33768275 | Hypocrea/Trichoderma: species with conidiophore elongations and green conidia |
| Q35680051 | ITS2 Secondary Structure Improves Discrimination between Medicinal "Mu Tong" Species when Using DNA Barcoding |
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| Q51667047 | Molecular cophylogenetic relationships between European bats and their ectoparasitic mites (Acari, Spinturnicidae). |
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| Q51825038 | Molecular phylogeny and evolution of the Trypanorhyncha Diesing, 1863 (Platyhelminthes: Cestoda). |
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| Q99974546 | Phylogeny of the New World Dysdercus (Insecta: Hemiptera: Pyrrhocoridae) and Evolution of their Colour Patterns |
| Q47372461 | Phylogeny of the orchid bees (Hymenoptera: Apinae: Euglossini): DNA and morphology yield equivalent patterns |
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| Q46689635 | Reduced Genetic Diversity and Increased Dispersal in Guigna (Leopardus guigna) in Chilean Fragmented Landscapes. |
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| Q46014958 | Reply from j.p. Huelsenbeck, j.j. Bull and C.w. Cunningham. |
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| Q45820371 | Ribosomal RNA genes and deuterostome phylogeny revisited: more cyclostomes, elasmobranchs, reptiles, and a brittle star |
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| Q33332400 | Species limits and phylogeography of North American cricket frogs (Acris: Hylidae). |
| Q31041023 | Species limits and relationships within Otidea inferred from multiple gene phylogenies |
| Q33951291 | Species tree inference in a recent radiation of orioles (Genus Icterus): multiple markers and methods reveal cytonuclear discordance in the northern oriole group. |
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| Q28756552 | The Apicomplexan whole-genome phylogeny: an analysis of incongruence among gene trees |
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| Q33548517 | The Trichoderma harzianum demon: complex speciation history resulting in coexistence of hypothetical biological species, recent agamospecies and numerous relict lineages. |
| Q28204898 | The dalbergioid legumes (Fabaceae): delimitation of a pantropical monophyletic clade |
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