scholarly article | Q13442814 |
P819 | ADS bibcode | 2014PLoSO...9j0806A |
P356 | DOI | 10.1371/JOURNAL.PONE.0100806 |
P932 | PMC publication ID | 4072696 |
P698 | PubMed publication ID | 24968068 |
P5875 | ResearchGate publication ID | 263476986 |
P2093 | author name string | John Goutsias | |
Ali Sobhi Afshar | |||
Joseph Xu | |||
P2860 | cites work | In vitro binding properties of tumor suppressor p53 with PUMA and NOXA. | Q54339819 |
TMPRSS2-ERG fusion, a common genomic alteration in prostate cancer activates C-MYC and abrogates prostate epithelial differentiation. | Q54529505 | ||
Characterization of microRNA-regulated protein-protein interaction network | Q63641881 | ||
Surrogate variable analysis using partial least squares (SVA-PLS) in gene expression studies | Q83215769 | ||
Combinatorial regulation of transcription factors and microRNAs | Q21202787 | ||
Detection of simultaneous group effects in microRNA expression and related target gene sets | Q21560981 | ||
Loss of type III transforming growth factor beta receptor expression increases motility and invasiveness associated with epithelial to mesenchymal transition during pancreatic cancer progression | Q24300340 | ||
KEGG: kyoto encyclopedia of genes and genomes | Q24515297 | ||
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles | Q24536351 | ||
A microRNA expression signature of human solid tumors defines cancer gene targets | Q24541455 | ||
MicroRNAs: target recognition and regulatory functions | Q24609584 | ||
miRTarBase: a database curates experimentally validated microRNA-target interactions | Q24613026 | ||
An extensive microRNA-mediated network of RNA-RNA interactions regulates established oncogenic pathways in glioblastoma | Q24629145 | ||
p53 represses c-Myc through induction of the tumor suppressor miR-145 | Q24644779 | ||
Targeted deletion reveals essential and overlapping functions of the miR-17 through 92 family of miRNA clusters | Q24645192 | ||
miRiad roles for the miR-17-92 cluster in development and disease | Q24646970 | ||
Inter- and intra-combinatorial regulation by transcription factors and microRNAs | Q24649664 | ||
The impact of microRNAs on protein output | Q24653549 | ||
miRecords: an integrated resource for microRNA-target interactions | Q24655642 | ||
miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'UTR microRNA recognition elements | Q24656666 | ||
MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals | Q24680274 | ||
The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease | Q27015587 | ||
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. | Q27824849 | ||
Linear models and empirical bayes methods for assessing differential expression in microarray experiments | Q27860758 | ||
Widespread changes in protein synthesis induced by microRNAs | Q27860886 | ||
c-Myc-regulated microRNAs modulate E2F1 expression | Q27861046 | ||
The miR-200 family and miR-205 regulate epithelial to mesenchymal transition by targeting ZEB1 and SIP1 | Q27861068 | ||
Exploration, normalization, and summaries of high density oligonucleotide array probe level data | Q27861098 | ||
MicroRNA expression profiles classify human cancers | Q28032481 | ||
DNMT1 and DNMT3b cooperate to silence genes in human cancer cells | Q28212826 | ||
Transitions between epithelial and mesenchymal states: acquisition of malignant and stem cell traits | Q28237197 | ||
Specific activation of microRNA-127 with downregulation of the proto-oncogene BCL6 by chromatin-modifying drugs in human cancer cells | Q28245307 | ||
Role of the TMPRSS2-ERG gene fusion in prostate cancer | Q28269156 | ||
E2F1-regulated microRNAs impair TGFbeta-dependent cell-cycle arrest and apoptosis in gastric cancer | Q28271985 | ||
Genetic unmasking of an epigenetically silenced microRNA in human cancer cells | Q28288806 | ||
let-7 and miR-17-92: small-sized major players in lung cancer development | Q28291431 | ||
Capturing heterogeneity in gene expression studies by surrogate variable analysis | Q28469315 | ||
The transcription factors Snail and Slug activate the transforming growth factor-beta signaling pathway in breast cancer | Q28743642 | ||
Combining dependent P-values | Q29540849 | ||
KEGG for integration and interpretation of large-scale molecular data sets | Q29547277 | ||
Regulation of mRNA translation and stability by microRNAs | Q29547304 | ||
Network motifs: theory and experimental approaches | Q29615325 | ||
Transcriptional activation of ZEB1 by Slug leads to cooperative regulation of the epithelial-mesenchymal transition-like phenotype in melanoma | Q38587374 | ||
A systematic screen reveals MicroRNA clusters that significantly regulate four major signaling pathways | Q39246185 | ||
Hsa-let-7a functions as a tumor suppressor in renal cell carcinoma cell lines by targeting c-myc | Q39430927 | ||
miR‐125b promotes growth of prostate cancer xenograft tumor through targeting pro‐apoptotic genes | Q39649207 | ||
MicroRNA profile analysis of human prostate cancers | Q39925866 | ||
TbetaRIII suppresses non-small cell lung cancer invasiveness and tumorigenicity | Q40028497 | ||
MicroRNA expression profiling in prostate cancer | Q40110318 | ||
The type III transforming growth factor-beta receptor as a novel tumor suppressor gene in prostate cancer | Q40174236 | ||
Genomic profiling identifies alterations in TGFbeta signaling through loss of TGFbeta receptor expression in human renal cell carcinogenesis and progression | Q40635030 | ||
Subsite-based alterations in miR-21, miR-125b, and miR-203 in squamous cell carcinoma of the oral cavity and correlation to important target proteins. | Q42022792 | ||
Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures | Q42161265 | ||
Intrinsic expression of host genes and intronic miRNAs in prostate carcinoma cells. | Q42252090 | ||
Immunohistochemistry for ERG expression as a surrogate for TMPRSS2-ERG fusion detection in prostatic adenocarcinomas | Q42350997 | ||
MicroRNA regulation of human protein protein interaction network | Q42413467 | ||
The microRNA profile of prostate carcinoma obtained by deep sequencing | Q43852104 | ||
ASAP: automated sequence annotation pipeline for web-based updating of sequence information with a local dynamic database. | Q45018263 | ||
A step toward functionally characterized prostate cancer molecular subtypes | Q47842932 | ||
Animal MicroRNAs confer robustness to gene expression and have a significant impact on 3'UTR evolution | Q29616370 | ||
The evolution of gene regulation by transcription factors and microRNAs | Q29617552 | ||
TGF-beta-induced epithelial to mesenchymal transition | Q29619820 | ||
Integrative genomic profiling of human prostate cancer | Q29619905 | ||
Tackling the widespread and critical impact of batch effects in high-throughput data | Q30004214 | ||
Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma | Q30425881 | ||
Snail and Slug promote epithelial-mesenchymal transition through beta-catenin-T-cell factor-4-dependent expression of transforming growth factor-beta3 | Q30440581 | ||
MicroRNAs coordinately regulate protein complexes | Q30504105 | ||
Inferring microRNA and transcription factor regulatory networks in heterogeneous data | Q30599650 | ||
TMPRSS2-ERG -specific transcriptional modulation is associated with prostate cancer biomarkers and TGF-β signaling. | Q31042968 | ||
Global and local architecture of the mammalian microRNA-transcription factor regulatory network. | Q33290828 | ||
MicroRNA let-7a inhibits proliferation of human prostate cancer cells in vitro and in vivo by targeting E2F2 and CCND2. | Q33564111 | ||
TransmiR: a transcription factor-microRNA regulation database | Q33600597 | ||
Coregulation of transcription factors and microRNAs in human transcriptional regulatory network | Q33827032 | ||
MicroRNA profiles of prostate carcinoma detected by multiplatform microRNA screening | Q33844958 | ||
Computational methods to identify miRNA targets | Q33939844 | ||
Genome-wide survey of microRNA-transcription factor feed-forward regulatory circuits in human. | Q33968199 | ||
Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data | Q34085568 | ||
OncomiR addiction in an in vivo model of microRNA-21-induced pre-B-cell lymphoma. | Q34130311 | ||
Negative regulation of the tumor suppressor p53 gene by microRNAs. | Q34142778 | ||
Computational discovery of miR-TF regulatory modules in human genome | Q34183853 | ||
Identification of microRNA-regulated gene networks by expression analysis of target genes | Q34255426 | ||
Joint Bayesian inference of condition-specific miRNA and transcription factor activities from combined gene and microRNA expression data | Q34259476 | ||
Combinatorial network of transcriptional regulation and microRNA regulation in human cancer | Q34301393 | ||
An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury | Q34578633 | ||
The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation. | Q34774140 | ||
Genomic profiling of microRNA and messenger RNA reveals deregulated microRNA expression in prostate cancer | Q34803786 | ||
svapls: an R package to correct for hidden factors of variability in gene expression studies | Q34863055 | ||
Epigenetics and genetics. MicroRNAs en route to the clinic: progress in validating and targeting microRNAs for cancer therapy | Q35039281 | ||
The type III TGF-beta receptor suppresses breast cancer progression | Q35191593 | ||
Principles of microRNA regulation of a human cellular signaling network | Q35193525 | ||
Role of transforming growth factor Beta in human cancer | Q36073421 | ||
Epigenetic deregulation of miR-29a and miR-1256 by isoflavone contributes to the inhibition of prostate cancer cell growth and invasion | Q36187865 | ||
Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots | Q36203378 | ||
Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma | Q36213745 | ||
The architecture of the gene regulatory networks of different tissues | Q36218037 | ||
Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers | Q36280564 | ||
Updating annotations with the distributed annotation system and the automated sequence annotation pipeline | Q36333009 | ||
Silencing of microRNA families by seed-targeting tiny LNAs | Q36522844 | ||
Diverse functions of miR-125 family in different cell contexts | Q36594402 | ||
A computational screen for mouse signaling pathways targeted by microRNA clusters. | Q36740718 | ||
A microRNA DNA methylation signature for human cancer metastasis | Q36861111 | ||
Recurrent gene fusions in prostate cancer | Q37194503 | ||
MicroRNAs and cancer: current state and future perspectives in urologic oncology | Q37360740 | ||
Transforming growth factor-beta signaling in epithelial-mesenchymal transition and progression of cancer | Q37616967 | ||
mir-17-92: a polycistronic oncomir with pleiotropic functions | Q37678802 | ||
MicroRNA control of signal transduction | Q37706077 | ||
MicroRNAs--targeting and target prediction | Q37706854 | ||
Cancer epigenetics reaches mainstream oncology | Q37851012 | ||
Gene set analysis of genome-wide association studies: methodological issues and perspectives | Q37874759 | ||
DNA methylation-associated silencing of tumor-suppressor microRNAs in cancer | Q37921080 | ||
MicroRNAs and their targets: recognition, regulation and an emerging reciprocal relationship | Q37992965 | ||
Regulatory networks defining EMT during cancer initiation and progression | Q38076317 | ||
Online resources for miRNA analysis. | Q38091847 | ||
Widespread deregulation of microRNA expression in human prostate cancer. | Q38297946 | ||
Regulation of miR-17-92a cluster processing by the microRNA binding protein SND1. | Q38314816 | ||
Loss of type III transforming growth factor-beta receptor expression is due to methylation silencing of the transcription factor GATA3 in renal cell carcinoma | Q38345995 | ||
HOCTAR database: a unique resource for microRNA target prediction | Q38502875 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P4510 | describes a project that uses | limma | Q112236343 |
P433 | issue | 6 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | prostate cancer | Q181257 |
P304 | page(s) | e100806 | |
P577 | publication date | 2014-06-26 | |
P1433 | published in | PLOS One | Q564954 |
P1476 | title | Integrative identification of deregulated miRNA/TF-mediated gene regulatory loops and networks in prostate cancer | |
P478 | volume | 9 |
Q47105151 | A causal mediation model of ischemia reperfusion injury in the retina. |
Q64064202 | An in-silico approach for discovery of microRNA-TF regulation of DISC1 interactome mediating neuronal migration |
Q59791985 | Anabolic Androgenic Steroids: Searching New Molecular Biomarkers |
Q38963137 | Analysis of miRNA, mRNA, and TF interactions through network-based methods. |
Q58715921 | Construction and analysis of mRNA, miRNA, lncRNA, and TF regulatory networks reveal the key genes associated with prostate cancer |
Q34636525 | Deciphering miRNA transcription factor feed-forward loops to identify drug repurposing candidates for cystic fibrosis |
Q38796898 | Detecting the Molecular System Signatures of Idiopathic Pulmonary Fibrosis through Integrated Genomic Analysis |
Q36798313 | Elucidating MicroRNA Regulatory Networks Using Transcriptional, Post-transcriptional, and Histone Modification Measurements |
Q36782329 | Exosomes from bulk and stem cells from human prostate cancer have a differential microRNA content that contributes cooperatively over local and pre-metastatic niche |
Q58114141 | From Single Level Analysis to Multi-Omics Integrative Approaches: A Powerful Strategy towards the Precision Oncology |
Q40856384 | Integrated analysis of microRNAs, transcription factors and target genes expression discloses a specific molecular architecture of hyperdiploid multiple myeloma |
Q92825097 | MicroRNA and transcription factor co-regulatory networks and subtype classification of seminoma and non-seminoma in testicular germ cell tumors |
Q34448246 | MicroRNAs as predictive biomarkers and therapeutic targets in prostate cancer. |
Q37582591 | Screening the key microRNAs and transcription factors in prostate cancer based on microRNA functional synergistic relationships |
Q38810127 | Systems biology study of transcriptional and post-transcriptional co-regulatory network sheds light on key regulators involved in important biological processes in Citrus sinensis |
Q38720187 | miR-143 Induces the Apoptosis of Prostate Cancer LNCap Cells by Suppressing Bcl-2 Expression. |
Search more.