Prediction of haplotypes for ungenotyped animals and its effect on marker-assisted breeding value estimation

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Prediction of haplotypes for ungenotyped animals and its effect on marker-assisted breeding value estimation is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1020308529
P356DOI10.1186/1297-9686-42-10
P932PMC publication ID2861017
P698PubMed publication ID20307301
P5875ResearchGate publication ID42388329

P2093author name stringMario P L Calus
Roel F Veerkamp
Han A Mulder
P2860cites workA simple method to approximate gene content in large pedigree populations: application to the myostatin gene in dual-purpose Belgian Blue cattleQ50472222
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An efficient algorithm to compute the posterior genotypic distribution for every member of a pedigree without loops.Q52389374
Accuracy of marker-assisted selection with single markers and marker haplotypes in cattleQ57278777
Accuracy of prediction of gene content in large animal populations and its use for candidate gene detection and genetic evaluationQ80894355
Extent of linkage disequilibrium in Holstein cattle in North AmericaQ81107310
Evaluation of linkage disequilibrium measures between multi-allelic markers as predictors of linkage disequilibrium between markers and QTLQ81255174
The effect of missing marker genotypes on the accuracy of gene-assisted breeding value estimation: a comparison of methodsQ83735419
Linkage disequilibrium in finite populationsQ87127089
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phaseQ24542357
Descent graphs in pedigree analysis: applications to haplotyping, location scores, and marker-sharing statisticsQ29615769
Extent of genome-wide linkage disequilibrium in Australian Holstein-Friesian cattle based on a high-density SNP panelQ33330740
Association of a lysine-232/alanine polymorphism in a bovine gene encoding acyl-CoA:diacylglycerol acyltransferase (DGAT1) with variation at a quantitative trait locus for milk fat contentQ34034963
Comparing linkage disequilibrium-based methods for fine mapping quantitative trait lociQ34644064
Novel multilocus measure of linkage disequilibrium to estimate past effective population size.Q34994163
Effects of the number of markers per haplotype and clustering of haplotypes on the accuracy of QTL mapping and prediction of genomic breeding valuesQ35578127
Commercial application of marker- and gene-assisted selection in livestock: strategies and lessonsQ35912114
Accuracy of genomic selection using different methods to define haplotypesQ36391910
Linkage disequilibrium in related breeding lines of chickensQ36416183
Characterizing linkage disequilibrium in pig populationsQ36769897
Linkage disequilibrium and persistence of phase in Holstein-Friesian, Jersey and Angus cattleQ36778141
Marker assisted selection with optimised contributions of the candidates to selectionQ37249587
Power and precision of alternate methods for linkage disequilibrium mapping of quantitative trait lociQ41882729
Linkage disequilibrium and homozygosity of chromosome segments in finite populationsQ43633645
Positional candidate cloning of a QTL in dairy cattle: identification of a missense mutation in the bovine DGAT1 gene with major effect on milk yield and compositionQ43876933
Method to estimate genotype probabilities at individual loci in farm livestockQ47722809
A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig.Q48222850
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P304page(s)10
P577publication date2010-03-22
P1433published inGenetics Selection EvolutionQ3544673
P1476titlePrediction of haplotypes for ungenotyped animals and its effect on marker-assisted breeding value estimation
P478volume42

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cites work (P2860)
Q33915731Comparison of analyses of the QTLMAS XIV common dataset. I: genomic selection
Q92132813GVCHAP: A Computing Pipeline for Genomic Prediction and Variance Component Estimation Using Haplotypes and SNP Markers
Q40312999Genetic evaluation with major genes and polygenic inheritance when some animals are not genotyped using gene content multiple-trait BLUP.
Q42550828Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations
Q35871740Multi-allelic haplotype model based on genetic partition for genomic prediction and variance component estimation using SNP markers
Q38972374Using markers with large effect in genetic and genomic predictions

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