Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands

scientific article

Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.7717/PEERJ.3472
P932PMC publication ID5482262
P698PubMed publication ID28649474

P50authorRuth GatesQ57947960
Ross CunningQ42889223
P2093author name stringPeter J Edmunds
P2860cites workImproved resolution of reef-coral endosymbiont (Symbiodinium) species diversity, ecology, and evolution through psbA non-coding region genotypingQ21560883
phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census dataQ24288698
MUSCLE: multiple sequence alignment with high accuracy and high throughputQ24613456
QIIME allows analysis of high-throughput community sequencing dataQ24616873
Fine-scale diversity and specificity in the most prevalent lineage of symbiotic dinoflagellates (Symbiodinium, Dinophyceae) of the CaribbeanQ28238315
Genotypic diversity and spatial-temporal distribution of Symbiodinium clones in an abundant reef coralQ28252948
Measuring rDNA diversity in eukaryotic microbial systems: how intragenomic variation, pseudogenes, and PCR artifacts confound biodiversity estimatesQ28256912
Outbreak and persistence of opportunistic symbiotic dinoflagellates during the 2005 Caribbean mass coral 'bleaching' eventQ28257924
The relative significance of host-habitat, depth, and geography on the ecology, endemism, and speciation of coral endosymbionts in the genus SymbiodiniumQ28283434
Tradeoffs to Thermal Acclimation: Energetics and Reproduction of a Reef Coral with Heat TolerantSymbiodiniumType-DQ58691409
Phylogenetic identification of symbiotic dinoflagellates via length heteroplasmy in domain V of chloroplast large subunit (cp23S)-ribosomal DNA sequencesQ73700283
Functional significance of genetically different symbiotic algae Symbiodinium in a coral reef symbiosisQ81294906
Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change.Q51107360
Niche partitioning of closely related symbiotic dinoflagellates.Q51702562
Multivariate dispersion as a measure of beta diversity.Q51726855
Specificity is rarely absolute in coral-algal symbiosis: implications for coral response to climate change.Q54321870
Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals.Q55554381
Cutadapt removes adapter sequences from high-throughput sequencing readsQ55953584
Graph drawing by force-directed placementQ55954181
Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genusSymbiodiniumQ56001469
Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversionQ56001471
Flexibility and specificity in coral-algal symbiosis: diversity, ecology, and biogeography of SymbiodiniumQ56047563
Specificity in communities of Symbiodinium in corals from Johnston AtollQ56482687
Molecular drive in multigene families: How biological novelties arise, spread and are assimilatedQ56533481
Predicting the distribution of Montastraea reefs using wave exposureQ57921019
Cohesive molecular genetic data delineate species diversity in the dinoflagellate genus SymbiodiniumQ28307427
Maternal effects and Symbiodinium community composition drive differential patterns in juvenile survival in the coral Acropora tenuisQ28596292
Recovery from bleaching is mediated by threshold densities of background thermo-tolerant symbiont types in a reef-building coralQ28596881
Symbiodinium biogeography tracks environmental patterns rather than host genetics in a key Caribbean reef-builder, Orbicella annularisQ28818588
An Introduction to the Near–Real–Time QuikSCAT DataQ29028058
INVESTIGATING THE BIODIVERSITY, ECOLOGY, AND PHYLOGENY OF ENDOSYMBIOTIC DINOFLAGELLATES IN THE GENUS SYMBIODINIUM USING THE ITS REGION: IN SEARCH OF A "SPECIES" LEVEL MARKERQ29036496
Diversity and community structure of symbiotic dinoflagellates from Caribbean coral reefsQ29307992
Search and clustering orders of magnitude faster than BLASTQ29547431
Symbiotic specificity, association patterns, and function determine community responses to global changes: defining critical research areas for coral-Symbiodinium symbiosesQ30654776
Evidence for a host role in thermotolerance divergence between populations of the mustard hill coral (Porites astreoides) from different reef environmentsQ30658572
Host-specialist lineages dominate the adaptive radiation of reef coral endosymbiontsQ30679284
Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.Q30720610
Coral reefs: corals' adaptive response to climate change.Q30766954
New insights into the dynamics between reef corals and their associated dinoflagellate endosymbionts from population genetic studiesQ30829798
Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef coralsQ30841066
"Species" radiations of symbiotic dinoflagellates in the Atlantic and Indo-Pacific since the Miocene-Pliocene transitionQ30975917
New species of Clade B Symbiodinium (Dinophyceae) from the greater Caribbean belong to different functional guilds: S. aenigmaticum sp. nov., S. antillogorgium sp. nov., S. endomadracis sp. nov., and S. pseudominutum sp. nov.Q31059751
A filtering method to generate high quality short reads using illumina paired-end technologyQ31121199
A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai'iQ33550007
Quantifying cryptic Symbiodinium diversity within Orbicella faveolata and Orbicella franksi at the Flower Garden Banks, Gulf of MexicoQ33667908
Identifying and characterizing alternative molecular markers for the symbiotic and free-living dinoflagellate genus SymbiodiniumQ34125278
Molecular delineation of species in the coral holobiontQ34373105
Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium networksQ34427785
Physiological correlates of ecological divergence along an urbanization gradient: differential tolerance to ammonia among molecular forms of the malaria mosquito Anopheles gambiaeQ34538225
SymbioGBR: a web-based database of Symbiodinium associated with cnidarian hosts on the Great Barrier ReefQ34622822
Assessing Symbiodinium diversity in scleractinian corals via next-generation sequencing-based genotyping of the ITS2 rDNA regionQ34844958
Deep-sequencing method for quantifying background abundances of symbiodinium types: exploring the rare symbiodinium biosphere in reef-building coralsQ35146893
Variability of Symbiodinium Communities in Waters, Sediments, and Corals of Thermally Distinct Reef Pools in American SamoaQ35880581
A Trait-Based Approach to Advance Coral Reef ScienceQ35954710
Heterotrophy in tropical scleractinian corals.Q37338428
Biogeography and molecular diversity of coral symbionts in the genus Symbiodinium around the Arabian PeninsulaQ37664012
Exploring Symbiodinium diversity and host specificity in Acropora corals from geographical extremes of Western Australia with 454 amplicon pyrosequencingQ42661406
GeoSymbio: a hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbiosesQ43651436
Coral bleaching: thermal adaptation in reef coral symbiontsQ43931992
Symbiodinium population genetics: testing for species boundaries and analysing samples with mixed genotypesQ44486912
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesphyloseqQ106407822
P407language of work or nameEnglishQ1860
P921main subjectUnited States Virgin IslandsQ11703
metacommunityQ6822432
high-throughput sequencingQ112147935
P304page(s)e3472
P577publication date2017-06-21
P1433published inPeerJQ2000010
P1476titleUsing high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, US Virgin Islands
P478volume5

Reverse relations

cites work (P2860)
Q55284825An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region.
Q90245876Chronic disturbance modulates symbiont (Symbiodiniaceae) beta diversity on a coral reef
Q92099627Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic
Q93197790Depth Influences Symbiodiniaceae Associations Among Montastraea cavernosa Corals on the Belize Barrier Reef
Q104134904Dynamic symbioses reveal pathways to coral survival through prolonged heatwaves
Q59137440Flexible Symbiotic Associations of With Five Typical Coral Species in Tropical and Subtropical Reef Regions of the Northern South China Sea
Q96303490Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae
Q41418307Heritability of the Symbiodinium community in vertically- and horizontally-transmitting broadcast spawning corals
Q49499344Inter-domain microbial diversity within the coral holobiont Siderastrea siderea from two depth habitats.
Q94570458Leptoria phrygia in Southern Taiwan shuffles and switches symbionts to resist thermal-induced bleaching
Q52309250Patterns of Symbiodinium (Dinophyceae) diversity and assemblages among diverse hosts and the coral reef environment of Lizard Island, Australia.
Q90358343Searching for phylogenetic patterns of Symbiodiniaceae community structure among Indo-Pacific Merulinidae corals
Q61454597Symbiont type and environmental factors affect transcriptome-wide gene expression in the coral
Q90134855The many faced symbiotic snakelocks anemone (Anemonia viridis, Anthozoa): host and symbiont genetic differentiation among colour morphs
Q90134879Transgenerational inheritance of shuffled symbiont communities in the coral Montipora digitata
Q49912295Unexpected mixed-mode transmission and moderate genetic regulation of Symbiodinium communities in a brooding coral.
Q92356424Unique quantitative Symbiodiniaceae signature of coral colonies revealed through spatio-temporal survey in Moorea

Search more.