NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences

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NEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences is …
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scholarly articleQ13442814

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P8978DBLP publication IDjournals/nar/ChuangLKG14
P356DOI10.1093/NAR/GKU318
P932PMC publication ID4086065
P698PubMed publication ID24782517
P5875ResearchGate publication ID261998927

P50authorIvelin S. GeorgievQ28379672
Peter D. KwongQ68690794
P2093author name stringGwo-Yu Chuang
David Liou
P2860cites workThe Protein Data BankQ24515306
Increasing the potency and breadth of an HIV antibody by using structure-based rational designQ24631510
Structural definition of a conserved neutralization epitope on HIV-1 gp120Q24655948
CEP: a conformational epitope prediction server.Q24813120
Structure-based stabilization of HIV-1 gp120 enhances humoral immune responses to the induced co-receptor binding siteQ27316899
Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9Q27644478
Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01Q27663293
Elicitation of structure-specific antibodies by epitope scaffoldsQ27664711
Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loopsQ27678226
Rationalization and Design of the Complementarity Determining Region Sequences in an Antibody-Antigen Recognition InterfaceQ27678251
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and UsabilityQ27860817
Computational prediction of broadly neutralizing HIV-1 antibody epitopes from neutralization activity dataQ28535583
Broad and potent neutralizing antibodies from an African donor reveal a new HIV-1 vaccine targetQ29547347
Rational design of envelope identifies broadly neutralizing human monoclonal antibodies to HIV-1Q29619511
ElliPro: a new structure-based tool for the prediction of antibody epitopesQ30373719
Computational analysis of anti-HIV-1 antibody neutralization panel data to identify potential functional epitope residuesQ30644992
New hydrophilicity scale derived from high-performance liquid chromatography peptide retention data: correlation of predicted surface residues with antigenicity and X-ray-derived accessible sitesQ30708262
Partner-aware prediction of interacting residues in protein-protein complexes from sequence dataQ31043905
Meta-analysis for pathway enrichment analysis when combining multiple genomic studiesQ33834735
Variable loop glycan dependency of the broad and potent HIV-1-neutralizing antibodies PG9 and PG16.Q34178201
The mutual information: detecting and evaluating dependencies between variables.Q34973910
SPEER-SERVER: a web server for prediction of protein specificity determining sitesQ36088556
Use of peptide synthesis to probe viral antigens for epitopes to a resolution of a single amino acidQ36264118
SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignmentsQ36954082
Residue-level prediction of HIV-1 antibody epitopes based on neutralization of diverse viral strainsQ37123109
Prediction of residues in discontinuous B-cell epitopes using protein 3D structuresQ41926924
Palivizumab-resistant human respiratory syncytial virus infection in infancyQ45375472
Antibody-specified B-cell epitope prediction in line with the principle of context-awarenessQ45703938
P433issueWeb Server issue
P407language of work or nameEnglishQ1860
P921main subjectweb serverQ11288
P304page(s)W64-71
P577publication date2014-04-29
P1433published inNucleic Acids ResearchQ135122
P1476titleNEP: web server for epitope prediction based on antibody neutralization of viral strains with diverse sequences
P478volume42

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cites work (P2860)
Q36263513Antibodyomics: bioinformatics technologies for understanding B-cell immunity to HIV-1.
Q40115467B and T Cell Epitope-Based Peptides Predicted from Evolutionarily Conserved and Whole Protein Sequences of Ebola Virus as Vaccine Targets
Q35810109CATNAP: a tool to compile, analyze and tally neutralizing antibody panels
Q60913187HIV-1 Neutralizing Antibody Signatures and Application to Epitope-Targeted Vaccine Design
Q64096904Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features
Q35253640PyIgClassify: a database of antibody CDR structural classifications
Q92203163SEPPA 3.0-enhanced spatial epitope prediction enabling glycoprotein antigens
Q35989209The Anopheles-midgut APN1 structure reveals a new malaria transmission-blocking vaccine epitope

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