Simrank: Rapid and sensitive general-purpose k-mer search tool

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Simrank: Rapid and sensitive general-purpose k-mer search tool is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P6179Dimensions Publication ID1000431206
P356DOI10.1186/1472-6785-11-11
P932PMC publication ID3097142
P698PubMed publication ID21524302
P5875ResearchGate publication ID51080977

P50authorZhiheng PeiQ30505516
Eoin L. BrodieQ43756088
Gary L AndersenQ44016653
Alexander V AlekseyenkoQ56256515
Todd Z. DeSantisQ114370356
P2093author name stringNiels Larsen
Ulas Karaoz
Keith Keller
Navjeet N S Singh
P2860cites workTopographical and temporal diversity of the human skin microbiomeQ24647583
Phylogenetic identification and in situ detection of individual microbial cells without cultivationQ24651527
Basic local alignment search toolQ25938991
Bacterial community in the crop of the hoatzin, a neotropical folivorous flying birdQ28756873
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequencesQ29547172
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARBQ29547254
Search and clustering orders of magnitude faster than BLASTQ29547431
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomyQ29547619
SSAHA: a fast search method for large DNA databasesQ29614458
FastTree: computing large minimum evolution trees with profiles instead of a distance matrixQ29614577
ROCR: visualizing classifier performance in RQ29615821
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimatesQ29616592
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysisQ29616731
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environmentQ33276592
Comprehensive DNA signature discovery and validationQ33285036
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognitionQ33287738
Short-term temporal variability in airborne bacterial and fungal populationsQ33304962
Metagenomics for mining new genetic resources of microbial communitiesQ33380038
Bacterial diversity and White Plague Disease-associated community changes in the Caribbean coral Montastraea faveolataQ33398333
Metagenomics: Concept, methodology, ecological inference and recent advancesQ33418467
Alignment and clustering of phylogenetic markers--implications for microbial diversity studiesQ33545455
DNA signatures for detecting genetic engineering in bacteria.Q36678592
Evidence of multiple Treponema phylotypes involved in bovine digital dermatitis as shown by 16S rRNA gene analysis and fluorescence in situ hybridization.Q36898298
Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencersQ36935436
MICA: desktop software for comprehensive searching of DNA databasesQ38786254
On the reliable identification of plant sequences containing a polyadenylation site.Q45965048
Using BLAST for identifying gene and protein names in journal articles.Q48382792
Pash 2.0: scaleable sequence anchoring for next-generation sequencing technologies.Q51895938
Evolutionary optimization of sequence kernels for detection of bacterial gene starts.Q51897990
Extending assembly of short DNA sequences to handle error.Q51905275
The ribosomal database project.Q55361548
P921main subjectK-merQ6322851
k-mer sequenceQ58054004
search toolQ60461507
P304page(s)11
P577publication date2011-04-27
P1433published inBMC EcologyQ15745425
P1476titleSimrank: Rapid and sensitive general-purpose k-mer search tool
P478volume11