Design and directed evolution of a dideoxy purine nucleoside phosphorylase

scientific article

Design and directed evolution of a dideoxy purine nucleoside phosphorylase is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/PROTEIN/GZQ033
P932PMC publication ID2898500
P698PubMed publication ID20525731
P5875ResearchGate publication ID44651697

P50authorJens MeilerQ29315318
David NannemannQ58887668
Brian O. BachmannQ86531308
P2093author name stringKristian W Kaufmann
P2860cites workProtein Design by Directed EvolutionQ22065412
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Transition state analogue discrimination by related purine nucleoside phosphorylasesQ24643026
High-resolution structure prediction and the crystallographic phase problemQ24646937
Protein-DNA binding specificity predictions with structural modelsQ24811023
Transition state structure of purine nucleoside phosphorylase and principles of atomic motion in enzymatic catalysisQ27629392
Structural basis for substrate specificity of Escherichia coli purine nucleoside phosphorylaseQ27641894
Structural basis for inhibition of human PNP by immucillin-HQ27642104
Structures of human purine nucleoside phosphorylase complexed with inosine and ddIQ27642911
Structure-based Protocol for Identifying Mutations that Enhance Protein–Protein Binding AffinitiesQ27646507
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Alteration of enzyme specificity by computational loop remodeling and designQ27655618
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Backbone-dependent rotamer library for proteins. Application to side-chain predictionQ28267713
Structural analyses reveal two distinct families of nucleoside phosphorylasesQ28366428
A simple physical model for binding energy hot spots in protein-protein complexesQ28914753
Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling toolQ30427274
Computational method to reduce the search space for directed protein evolutionQ30660873
Towards in silico lead optimization: scores from ensembles of protein/ligand conformations reliably correlate with biological activityQ33262339
Extending Iterative Protein Redesign and Optimization (IPRO) in protein library design for ligand specificityQ33268494
In vivo reshaping the catalytic site of nucleoside 2'-deoxyribosyltransferase for dideoxy- and didehydronucleosides via a single amino acid substitutionQ33335671
Computational tools for designing and engineering biocatalystsQ33419568
Directed evolution of D-sialic acid aldolase to L-3-deoxy-manno-2-octulosonic acid (L-KDO) aldolaseQ33879137
Anti-HIV drugs: 25 compounds approved within 25 years after the discovery of HIV.Q34910804
Enzymatic transition states: thermodynamics, dynamics and analogue designQ35974318
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Prodrugs of nucleoside analogues for improved oral absorption and tissue targetingQ36909036
Structural determinants of species-selective substrate recognition in human and Drosophila serotonin transporters revealed through computational docking studiesQ37436023
Examining the production costs of antiretroviral drugsQ40294375
Rapid identification of enzyme variants for reengineered alkaloid biosynthesis in periwinkleQ41447443
New algorithms and an in silico benchmark for computational enzyme designQ42036773
Enzymic determination of inorganic phosphates, organic phosphates and phosphate-liberating enzymes by use of nucleoside phosphorylase-xanthine oxidase (dehydrogenase)-coupled reactions.Q42085849
Production of 2',3'-dideoxyadenosine and 2',3'-dideoxyinosine from 2',3'-dideoxyuridine and the corresponding purine bases by resting cells of Escherichia coli AJ 2595.Q42125891
Human erythrocytic purine nucleoside phosphorylase: reaction with sugar-modified nucleoside substratesQ42256935
Transition state analysis for human and Plasmodium falciparum purine nucleoside phosphorylases.Q44759806
Activating the phosphate nucleophile at the catalytic site of purine nucleoside phosphorylase: a vibrational spectroscopic study.Q45005339
Arthrobacter oxydans as a biocatalyst for purine deaminationQ46215757
RosettaLigand docking with full ligand and receptor flexibility.Q51861937
ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility.Q51933455
Catalysis, binding and enzyme-substrate complementarity.Q54055916
Chemo-enzymatic syntheses of natural and unnatural 2'-deoxynucleosidesQ79082798
Expanding the range of substrate acceptance of enzymes: combinatorial active-site saturation testQ81804014
New therapies for hepatitis C virus infectionQ83148122
P433issue8
P921main subjectdirected evolutionQ440681
P304page(s)607-616
P577publication date2010-06-04
P1433published inProtein Engineering Design and SelectionQ15762396
P1476titleDesign and directed evolution of a dideoxy purine nucleoside phosphorylase
P478volume23

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cites work (P2860)
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Q35161643Assessing directed evolution methods for the generation of biosynthetic enzymes with potential in drug biosynthesis.
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Q27682375Bioretrosynthetic construction of a didanosine biosynthetic pathway
Q30360853Computational approaches for rational design of proteins with novel functionalities
Q38104437Computational design gains momentum in enzyme catalysis engineering
Q37835947Computational design of protein-ligand interfaces: potential in therapeutic development
Q35555046Enantioselective enzymes by computational design and in silico screening
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Q27677241Molecular differences between a mutase and a phosphatase: investigations of the activation step in Bacillus cereus phosphopentomutase.
Q38112629Small-molecule ligand docking into comparative models with Rosetta
Q31109061Using RosettaLigand for small molecule docking into comparative models

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