Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration

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Global transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bmcsb/HermanTS11
P6179Dimensions Publication ID1041394789
P356DOI10.1186/1752-0509-5-119
P932PMC publication ID3199767
P698PubMed publication ID21801369
P5875ResearchGate publication ID51532671

P50authorDov J StekelQ56333897
P2093author name stringChristopher M Thomas
Dorota Herman
P2860cites workThe control of fluxQ28237216
Bayesian inference of biochemical kinetic parameters using the linear noise approximation.Q33511359
Reconstructing nonlinear dynamic models of gene regulation using stochastic samplingQ33520988
Conjugation between bacterial and mammalian cellsQ34103563
Bacterial conjugative plasmids mobilize DNA transfer between bacteria and yeastQ34505179
Gene control in broad host range plasmid RK2: expression, polypeptide product, and multiple regulatory functions of korBQ35586460
Plasmid R1--replication and its controlQ36274445
Bayesian methods in bioinformatics and computational systems biologyQ36790389
A single aromatic residue in transcriptional repressor protein KorA is critical for cooperativity with its co-regulator KorB.Q37187294
Gene amplification and adaptive evolution in bacteria.Q37580926
Replication and partitioning of the broad-host-range plasmid RK2.Q37769849
Multifunctional repressor KorB can block transcription by preventing isomerization of RNA polymerase-promoter complexesQ38320958
Conserved C-terminal region of global repressor KorA of broad-host-range plasmid RK2 is required for co-operativity between KorA and a second RK2 global regulator, KorB.Q38323826
Repression at a distance by the global regulator KorB of promiscuous IncP plasmidsQ38324938
KorB protein of promiscuous plasmid RP4 recognizes inverted sequence repetitions in regions essential for conjugative plasmid transferQ38329261
Cooperativity between KorB and TrbA repressors of broad-host-range plasmid RK2.Q39502325
Incompatibility group P plasmids: genetics, evolution, and use in genetic manipulationQ39683511
Nucleotide sequence of the transcriptional repressor gene korB which plays a key role in regulation of the copy number of broad host range plasmid RK2.Q40390507
Gene regulation on broad host range plasmid RK2: identification of three novel operons whose transcription is repressed by both KorA and KorC.Q40546964
Complete nucleotide sequence of Birmingham IncP alpha plasmids. Compilation and comparative analysisQ42597254
Bayesian inference of the sites of perturbations in metabolic pathways via Markov chain Monte CarloQ45876108
Sequence of plasmid pBS228 and reconstruction of the IncP-1alpha phylogenyQ48081324
Identification of a seventh operon on plasmid RK2 regulated by the korA gene productQ48268970
Distribution of the partitioning protein KorB on the genome of IncP-1 plasmid RK2.Q54424673
The multiple antibiotic resistance IncP-1 plasmid pKJK5 isolated from a soil environment is phylogenetically divergent from members of the previously established α, β and δ sub-groupsQ57272595
Molecular vehicle properties of the broad host range plasmid RK2Q66848167
Heteroduplex analysis of P-plasmid evolution: the role of insertion and deletion of transposable elementsQ70150201
Purification of KorA protein from broad host range plasmid RK2: definition of a hierarchy of KorA operatorsQ71514631
The hierarchy of KorB binding at its 12 binding sites on the broad-host-range plasmid RK2 and modulation of this binding by IncC1 proteinQ73329901
P921main subjectstatisticsQ12483
mathematical modelQ486902
P304page(s)119
P577publication date2011-07-29
P1433published inBMC Systems BiologyQ4835949
P1476titleGlobal transcription regulation of RK2 plasmids: a case study in the combined use of dynamical mathematical models and statistical inference for integration of experimental data and hypothesis exploration
P478volume5

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cites work (P2860)
Q34490376Adaptation for protein synthesis efficiency in a naturally occurring self-regulating operon
Q35448371Analysis of occludin trafficking, demonstrating continuous endocytosis, degradation, recycling and biosynthetic secretory trafficking
Q39909585Location and dynamics of an active promoter in Escherichia coli K-12
Q35781041Plasmid Detection, Characterization, and Ecology
Q43231035Quantification of IncP-1 plasmid prevalence in environmental samples
Q60953419Reconsidering plasmid maintenance factors for computational plasmid design
Q35584400The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress

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