Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA

scientific article published on 23 September 2011

Evaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/AEM.05610-11
P932PMC publication ID3209006
P698PubMed publication ID21948828

P50authorJacques RavelQ30093147
Shawn W PolsonQ56910373
Rachel L MarineQ59149385
Graham HatfullQ64743836
P2093author name stringK Eric Wommack
Matthew Sullivan
Michael Dumas
Daniel Russell
Fraz Syed
P2860cites workGenomic analysis of uncultured marine viral communitiesQ24540367
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic informationQ24806209
The impact of next-generation sequencing technology on geneticsQ28268088
Assembly of viral metagenomes from yellowstone hot springsQ28757816
Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transpositionQ30476628
Analysis of high-throughput sequencing and annotation strategies for phage genomesQ30483489
Rapid amplification of plasmid and phage DNA using Phi 29 DNA polymerase and multiply-primed rolling circle amplificationQ31920623
Mechanism of chimera formation during the Multiple Displacement Amplification reactionQ33281958
Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomesQ33418269
Systematic overrepresentation of DNA termini and underrepresentation of subterminal regions among sequencing templates prepared from hydrodynamically sheared linear DNA moleculesQ33528303
Metagenomic sequencing of an in vitro-simulated microbial communityQ33564344
Functional viral metagenomics and the next generation of molecular toolsQ33637263
Tn5 as a model for understanding DNA transpositionQ33964505
Usefulness of repeated GenomiPhi, a phi29 DNA polymerase-based rolling circle amplification kit, for generation of large amounts of plasmid DNA.Q34434469
Elucidation of the small RNA component of the transcriptomeQ34448230
Metagenomics: DNA sequencing of environmental samples.Q36320425
Bioinformatics challenges of new sequencing technologyQ37080622
Tn5/IS50 target recognition.Q37484335
Efficient random subcloning of DNA sheared in a recirculating point-sink flow systemQ37884300
Target site selection in transpositionQ41550231
Unraveling the viral tapestry (from inside the capsid out).Q42743126
The effect of sequence quality on sequence alignmentQ48358128
DNA sequence quality trimming and vector removalQ48654495
Viral metagenomicsQ54023394
Multiple displacement amplification compromises quantitative analysis of metagenomesQ57119754
P433issue22
P407language of work or nameEnglishQ1860
P921main subjecthigh-throughput sequencingQ112147935
P304page(s)8071-8079
P577publication date2011-09-23
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleEvaluation of a transposase protocol for rapid generation of shotgun high-throughput sequencing libraries from nanogram quantities of DNA
P478volume77

Reverse relations

cites work (P2860)
Q35069818A metagenomic framework for the study of airborne microbial communities
Q35736808A novel method for the multiplexed target enrichment of MinION next generation sequencing libraries using PCR-generated baits
Q22000581Achieving high-sensitivity for clinical applications using augmented exome sequencing
Q39697489Assessing Illumina technology for the high-throughput sequencing of bacteriophage genomes
Q35621583Automated Gel Size Selection to Improve the Quality of Next-generation Sequencing Libraries Prepared from Environmental Water Samples
Q30442512Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome
Q30421085Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification
Q39283243Critical points for an accurate human genome analysis.
Q92937218Deconvolution of nucleic-acid length distributions: a gel electrophoresis analysis tool and applications
Q35057671Development and bias assessment of a method for targeted metagenomic sequencing of marine cyanobacteria
Q92581348Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay
Q93335140Diverse Lineages of Candida albicans Live on Old Oaks
Q60913075Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing
Q34445022Evaluation of two approaches for assessing the genetic similarity of virioplankton populations as defined by genome size
Q64096933Fragmentation Through Polymerization (FTP): A new method to fragment DNA for next-generation sequencing
Q38085596From deep sequencing to viral tagging: recent advances in viral metagenomics
Q50036567Genome Sequencing of dsDNA-Containing Bacteriophages Directly from a Single Plaque
Q34366529Going viral: next-generation sequencing applied to phage populations in the human gut.
Q30382558Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene.
Q31057133Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data
Q35436236Illuminating choices for library prep: a comparison of library preparation methods for whole genome sequencing of Cryptococcus neoformans using Illumina HiSeq
Q30400521Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
Q36251836Improved genome sequencing using an engineered transposase
Q35047676Improved workflows for high throughput library preparation using the transposome-based Nextera system
Q47122134Library Construction from Subnanogram DNA for Pelagic Sea Water and Deep-Sea Sediments
Q26995193Library construction for next-generation sequencing: overviews and challenges
Q32183798Metagenomic Approaches to Assess Bacteriophages in Various Environmental Niches
Q31154965Microbial metabolic potential for carbon degradation and nutrient (nitrogen and phosphorus) acquisition in an ombrotrophic peatland
Q35885869Microfluidic droplet enrichment for targeted sequencing
Q30378121Miniaturization Technologies for Efficient Single-Cell Library Preparation for Next-Generation Sequencing.
Q37989166Next-generation sequencing: ready for the clinics?
Q35057829NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries.
Q38053654Ocean viruses: rigorously evaluating the metagenomic sample-to-sequence pipeline.
Q50066822Optimization of Poplar mRNA purification for trancriptome library construction
Q60928414Optimized ChIP-seq method facilitates transcription factor profiling in human tumors
Q35184230Performance comparison of four exome capture systems for deep sequencing
Q36507279Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing
Q36051182Quantitation of next generation sequencing library preparation protocol efficiencies using droplet digital PCR assays - a systematic comparison of DNA library preparation kits for Illumina sequencing
Q53278226Reducing inherent biases introduced during DNA viral metagenome analyses of municipal wastewater.
Q35216503SNES: single nucleus exome sequencing
Q30454551Sequencing platform and library preparation choices impact viral metagenomes
Q35060890Testing the reproducibility of multiple displacement amplification on genomes of clonal endosymbiont populations
Q24630576Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method
Q36149529Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics
Q36356887panelcn.MOPS: Copy-number detection in targeted NGS panel data for clinical diagnostics

Search more.