| P50 | author | B Jayaram | Q89704878 |
| P2093 | author name string | Robert C. Harris | |
| | Alexander H. Boschitsch | |
| | Marcia O. Fenley | |
| P2860 | cites work | Electrostatics of nanosystems: application to microtubules and the ribosome | Q24555224 |
| | The role of DNA shape in protein-DNA recognition | Q24658173 |
| | Recognition of the spliceosomal branch site RNA helix on the basis of surface and electrostatic features | Q24792130 |
| | A thermodynamic and structural analysis of DNA minor-groove complex formation | Q27625090 |
| | Classical electrostatics in biology and chemistry | Q29615082 |
| | Rapid grid-based construction of the molecular surface and the use of induced surface charge to calculate reaction field energies: applications to the molecular systems and geometric objects | Q29618574 |
| | Molecular dynamics study on the interaction of a mithramycin dimer with a decanucleotide duplex | Q31049207 |
| | Molecular modelling methods for prediction of sequence-selectivity in DNA recognition | Q33283371 |
| | Evaluation of molecular modelling methods to predict the sequence-selectivity of DNA minor groove binding ligands | Q33530463 |
| | Drug-DNA recognition: energetics and implications for design | Q33994672 |
| | Modular structure of transcription factors: implications for gene regulation | Q34110705 |
| | Thermodynamics of nucleic acids and their interactions with ligands | Q34147016 |
| | Characterization of a novel DNA minor-groove complex | Q34184633 |
| | Binding-linked protonation of a DNA minor-groove agent | Q34354149 |
| | On the magnitude of the electrostatic contribution to ligand-DNA interactions | Q34359326 |
| | Enthalpy-entropy compensations in drug-DNA binding studies | Q34377080 |
| | Properties of the Nucleic-acid Bases in Free and Watson-Crick Hydrogen-bonded States: Computational Insights into the Sequence-dependent Features of Double-helical DNA | Q34467021 |
| | A review of the role of the sequence-dependent electrostatic landscape in DNA alkylation patterns | Q36656400 |
| | Salt effects on ligand-DNA binding. Minor groove binding antibiotics. | Q36674449 |
| | Salt-mediated electrostatics in the association of TATA binding proteins to DNA: a combined molecular mechanics/Poisson-Boltzmann study | Q36678130 |
| | Noncovalent interactions with DNA: an overview | Q36796405 |
| | Antiparasitic compounds that target DNA. | Q36835020 |
| | Unusually strong binding to the DNA minor groove by a highly twisted benzimidazole diphenylether: induced fit and bound water | Q36844141 |
| | Specific binding of hoechst 33258 to the d(CGCAAATTTGCG)2 duplex: calorimetric and spectroscopic studies | Q36878524 |
| | Calorimetry and thermodynamics in drug design | Q37197972 |
| | The signature 3-O-sulfo group of the anticoagulant heparin sequence is critical for heparin binding to antithrombin but is not required for allosteric activation | Q37447881 |
| | Correlation of amine number and pDNA binding mechanism for trehalose-based polycations | Q38289499 |
| | Electrostatic contribution to the energy of binding of aromatic ligands with DNA. | Q38292561 |
| | Drug--DNA interactions. | Q38335482 |
| | DNA sequence dependent binding modes of 4',6-diamidino-2-phenylindole (DAPI). | Q38339233 |
| | Thermodynamic basis of chiral recognition in a DNA aptamer | Q38349441 |
| | Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity | Q39750512 |
| | The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides | Q39750514 |
| | The electrostatic characteristics of G.U wobble base pairs | Q42538862 |
| | Molecular basis of the interaction for an essential subunit PA-PB1 in influenza virus RNA polymerase: insights from molecular dynamics simulation and free energy calculation | Q43250372 |
| | Comparative thermodynamics for monomer and dimer sequence-dependent binding of a heterocyclic dication in the DNA minor groove | Q43939488 |
| | DAPI binding to the DNA minor groove: a continuum solvent analysis | Q44181591 |
| | Electrostatic free energy of the DNA double helix in counterion condensation theory | Q44253131 |
| | Structural analysis of the DNA target site and its interaction with Mbp1. | Q44268559 |
| | Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution | Q44311276 |
| | Approach to the limit of counterion condensation | Q44395624 |
| | Binding interaction of cationic phenazinium dyes with calf thymus DNA: a comparative study | Q46495269 |
| | Out-of-shape DNA minor groove binders: induced fit interactions of heterocyclic dications with the DNA minor groove | Q46793769 |
| | Electrostatic and non-electrostatic contributions to the binding free energies of anthracycline antibiotics to DNA. | Q46801912 |
| | Methylene blue binding to DNA with alternating AT base sequence: minor groove binding is favored over intercalation | Q47213114 |
| | Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. | Q48007210 |
| | Hybrid boundary element and finite difference method for solving the nonlinear Poisson-Boltzmann equation | Q48554560 |
| | DNA intercalation of methylene blue and quinacrine: new insights into base and sequence specificity from structural and thermodynamic studies with polynucleotides | Q50449985 |
| | Free-energy component analysis of 40 protein-DNA complexes: a consensus view on the thermodynamics of binding at the molecular level. | Q51641693 |
| | Contribution of the closing base pair to exceptional stability in RNA tetraloops: roles for molecular mimicry and electrostatic factors. | Q51826661 |
| | Poisson-Boltzmann model analysis of binding mRNA cap analogues to the translation initiation factor eIF4E. | Q51861077 |
| | A swift all-atom energy-based computational protocol to predict DNA-ligand binding affinity and DeltaTm. | Q51917774 |
| | A new outer boundary formulation and energy corrections for the nonlinear Poisson-Boltzmann equation. | Q51924907 |
| | Extensions of counterion condensation theory. I. Alternative geometries and finite salt concentration. | Q52026177 |
| | Aminoglycoside binding in the major groove of duplex RNA: the thermodynamic and electrostatic forces that govern recognition | Q57015862 |
| | Do electrostatic interactions destabilize protein-nucleic acid binding? | Q57132496 |
| | Salt effects on polyelectrolyte-ligand binding: comparison of Poisson-Boltzmann, and limiting law/counterion binding models | Q57137188 |
| | A detailed binding free energy study of 2 : 1 ligand–DNA complex formation by experiment and simulation | Q62551294 |
| | Berenil [1,3-Bis(4'-amidinophenyl)triazene] Binding to DNA Duplexes and to a RNA Duplex: Evidence for Both Intercalative and Minor Groove Binding Properties | Q71951958 |
| | Energetics of drug-DNA interactions | Q74561246 |
| | Do water molecules mediate protein-DNA recognition? | Q77642681 |
| | A molecular thermodynamic view of DNA-drug interactions: a case study of 25 minor-groove binders | Q80407167 |
| | Berberine-DNA complexation: new insights into the cooperative binding and energetic aspects | Q81445947 |
| | Thermodynamic characterization of the interaction between the C-terminal domain of extracellular superoxide dismutase and heparin by isothermal titration calorimetry | Q84562038 |
| | Binding free energy of selected anticancer compounds to DNA--theoretical calculations | Q95801438 |
| P433 | issue | 3 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | nucleic acid tertiary structure | Q3823894 |
| | chemical model | Q25109595 |
| P304 | page(s) | 879-886 | |
| P577 | publication date | 2010-08-01 | |
| | 2010-08-04 | |
| P1433 | published in | Biophysical Journal | Q2032955 |
| P1476 | title | Revisiting the association of cationic groove-binding drugs to DNA using a Poisson-Boltzmann approach | |
| | Revisiting the Association of Cationic Groove-Binding Drugs to DNA Using a Poisson-Boltzmann Approach | |
| P478 | volume | 99 | |