Effect of DNA groove binder distamycin A upon chromatin structure

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Effect of DNA groove binder distamycin A upon chromatin structure is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2011PLoSO...626486M
P356DOI10.1371/JOURNAL.PONE.0026486
P932PMC publication ID3202541
P698PubMed publication ID22046291
P5875ResearchGate publication ID51761090

P2093author name stringDipak Dasgupta
Parijat Majumder
P2860cites workAssociation of the anticancer antibiotic chromomycin A(3) with the nucleosome: role of core histone tail domains in the binding process.Q52544088
Linker DNA bending induced by the core histones of chromatin.Q54290296
Changes in chromatin folding in solution.Q54749218
Specific activation of transcription initiation by the sequence-specific DNA-binding agents distamycin A and netropsin.Q54767380
Effect of Poly(ADP-ribosyl)ation and Mg2+Ions on Chromatin Structure Revealed by Scanning Force Microscopy†Q57367189
Detection of drug binding to DNA by hydroxyl radical footprinting. Relationship of distamycin binding sites to DNA structure and positioned nucleosomes on 5S RNA genes of XenopusQ57636179
Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histonesQ67427258
Interaction of synthetic analogues of distamycin with poly(dA-dT): role of the conjugated N-methylpyrrole systemQ68532153
Interaction of netropsin and distamycin with deoxyribonucleic acid: electric dichroism studyQ72881707
Trinucleosome compaction studied by fluorescence energy transfer and scanning force microscopyQ80214723
Chromatin compaction by a polycomb group protein complexQ81067457
Dynamics and function of compact nucleosome arraysQ37357366
Distamycin A and tallimustine inhibit TBP binding and basal in vitro transcription.Q38295125
Parsing free energies of drug-DNA interactions.Q38309315
Binding of distamycin A and netropsin to the 12mer DNA duplexes containing mixed AT.GC sequences with at most five or three successive AT base pairsQ38309909
Specific inhibition of DNA binding to nuclear scaffolds and histone H1 by distamycin. The role of oligo(dA).oligo(dT) tractsQ38342812
Role of the hydrophobic effect in stability of site-specific protein-DNA complexesQ38343324
Determination of equilibrium binding affinity of distamycin and netropsin to the synthetic deoxyoligonucleotide sequence d(GGTATACC)2 by quantitative DNase I footprintingQ38346735
Interaction of daunomycin with acetylated chromatinQ39669121
Echinomycin and distamycin induce rotation of nucleosome core DNA.Q40418380
Antiviral activity of distamycin A against vaccinia virus is the result of inhibition of postreplicative mRNA synthesisQ40594927
The anti-cancer agent distamycin A displaces essential transcription factors and selectively inhibits myogenic differentiationQ41119700
Distamycin-induced inhibition of homeodomain-DNA complexes.Q41514518
Transcriptional inhibition by DNA torsional stress.Q41841414
Binding affinity and mode of distamycin A with A/T stretches in double-stranded DNA: importance of the terminal A/T residuesQ43098132
Sanguinarine interacts with chromatin, modulates epigenetic modifications, and transcription in the context of chromatinQ44326170
Association of anticancer drug mithramycin with H1-depleted chromatin: a comparison with native chromatinQ44350012
Association of chromatin with anticancer antibiotics, mithramycin and chromomycin A3.Q44466652
Dinucleosomes show compaction by ionic strength, consistent with bending of linker DNA.Q47708879
Calorimetric investigation of ethidium and netropsin binding to chicken erythrocyte chromatinQ47942936
Nuclei from rat liver: isolation method that combines purity with high yieldQ49488035
What determines the folding of the chromatin fiber?Q24602085
Specific interactions of distamycin A and its analogs with (A-T) rich and (G-C) rich duplex regions of DNA and deoxypolynucleotidesQ24613727
Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatinQ24681606
Crystal structures of nucleosome core particles in complex with minor groove DNA-binding ligandsQ27640403
Chromatin compaction by human MeCP2. Assembly of novel secondary chromatin structures in the absence of DNA methylationQ28177120
Coupling of local folding to site-specific binding of proteins to DNAQ29616464
Interaction of antitumor drug, mithramycin, with chromatinQ31854879
Relation between the convergence temperatures Th* and Ts* in protein unfoldingQ33339698
Distamycin A inhibits HMGA1-binding to the P-selectin promoter and attenuates lung and liver inflammation during murine endotoxemiaQ33586184
Effects of the Antibiotics Netropsin and Distamycin A on the Structure and Function of Nucleic AcidsQ34005588
The molecular origin of DNA-drug specificity in netropsin and distamycinQ34048525
Contributions of linker histones and histone H3 to chromatin structure: scanning force microscopy studies on trypsinized fibersQ34168034
Linker histone tails and N-tails of histone H3 are redundant: scanning force microscopy studies of reconstituted fibersQ34168040
Enthalpy-entropy compensations in drug-DNA binding studiesQ34377080
Local geometry and elasticity in compact chromatin structureQ34398588
X-ray structure of a tetranucleosome and its implications for the chromatin fibreQ34431881
Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopyQ35926293
Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopyQ36236348
Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA: DNA cleavage-inhibition patterns with methidiumpropyl-EDTA.Fe(II)Q36311672
Structure of the '30 nm' chromatin fibre: a key role for the linker histoneQ36484066
Conformation of chromatin oligomers. A new argument for a change with the hexanucleosomeQ36660512
DNA sequence preferences of several AT-selective minor groove binding ligandsQ36682523
Interaction of minor groove ligands to an AAATT/AATTT site: correlation of thermodynamic characterization and solution structureQ36720129
Non-covalent ligand/DNA interactions: minor groove binding agentsQ36824300
Minor groove binding ligands alter the rotational positioning of DNA fragments on nucleosome core particlesQ36827691
Specific binding of hoechst 33258 to the d(CGCAAATTTGCG)2 duplex: calorimetric and spectroscopic studiesQ36878524
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue10
P407language of work or nameEnglishQ1860
P304page(s)e26486
P577publication date2011-10-26
P1433published inPLOS OneQ564954
P1476titleEffect of DNA groove binder distamycin A upon chromatin structure
P478volume6

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cites work (P2860)
Q64061771A Comprehensive Biophysical Analysis of the Effect of DNA Binding Drugs on Protamine-induced DNA Condensation
Q38023113A revisit of the mode of interaction of small transcription inhibitors with genomic DNA.
Q34585595Anticancer drug mithramycin interacts with core histones: An additional mode of action of the DNA groove binder
Q53065381Association of antitumor antibiotic Mithramycin with Mn2+ and the potential cellular targets of Mithramycin after association with Mn2+.
Q21089803Minor groove binder distamycin remodels chromatin but inhibits transcription
Q28538507Mutation induced conformational changes in genomic DNA from cancerous K562 cells influence drug-DNA binding modes
Q38342769The DNA intercalators ethidium bromide and propidium iodide also bind to core histones
Q52855962The plant alkaloid chelerythrine binds to chromatin, alters H3K9Ac and modulates global gene expression.

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