Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment

scientific article

Pepitome: evaluating improved spectral library search for identification complementarity and quality assessment is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1021/PR200874E
P932PMC publication ID3292681
P698PubMed publication ID22217208
P5875ResearchGate publication ID51982036

P50authorDavid TabbQ42887966
P2093author name stringMatthew C Chambers
Amy-Joan L Ham
Surendra Dasari
Kristin L Carpenter
Lorenzo J Vega-Montoto
Misti A Martinez
P2860cites workUltrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
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Artificial decoy spectral libraries for false discovery rate estimation in spectral library searching in proteomicsQ30886403
Mass spectrometric protein identification using the global proteome machine.Q30989300
Method to compare collision-induced dissociation spectra of peptides: potential for library searching and subtractive analysisQ32021602
Using annotated peptide mass spectrum libraries for protein identificationQ33252895
Development and validation of a spectral library searching method for peptide identification from MS/MS.Q33273391
Using BiblioSpec for creating and searching tandem MS peptide librariesQ33329957
ProteoWizard: open source software for rapid proteomics tools developmentQ33349681
Building consensus spectral libraries for peptide identification in proteomicsQ33370900
Using spectral libraries for peptide identification from tandem mass spectrometry (MS/MS) dataQ33556034
IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filteringQ33607524
Proteomic parsimony through bipartite graph analysis improves accuracy and transparencyQ33607604
Repeatability and reproducibility in proteomic identifications by liquid chromatography-tandem mass spectrometryQ33639352
Performance metrics for liquid chromatography-tandem mass spectrometry systems in proteomics analysesQ33697726
Tandem Mass Spectrometry Spectral Libraries and Library SearchingQ33743184
Large improvements in MS/MS-based peptide identification rates using a hybrid analysisQ33842564
Spectrum-to-spectrum searching using a proteome-wide spectral libraryQ33885563
Protein identification using customized protein sequence databases derived from RNA-Seq dataQ34079606
Analytical validation of protein-based multiplex assays: a workshop report by the NCI-FDA interagency oncology task force on molecular diagnosticsQ37653060
mzIdentML: An Open Community-Built Standard Format for the Results of Proteomics Spectrum Identification AlgorithmsQ38429802
Sequence tagging reveals unexpected modifications in toxicoproteomicsQ39610972
TagRecon: high-throughput mutation identification through sequence taggingQ39743848
ScanRanker: Quality assessment of tandem mass spectra via sequence taggingQ42127370
Automation of nanoscale microcapillary liquid chromatography-tandem mass spectrometry with a vented columnQ44079243
A NEW MEASURE OF RANK CORRELATIONQ50368941
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectRNA sequencingQ2542347
P304page(s)1686-1695
P577publication date2012-01-27
P1433published inJournal of Proteome ResearchQ3186939
P1476titlePepitome: evaluating improved spectral library search for identification complementarity and quality assessment
P478volume11

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