DNA folding: structural and mechanical properties of the two-angle model for chromatin

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DNA folding: structural and mechanical properties of the two-angle model for chromatin is …
instance of (P31):
scholarly articleQ13442814

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P818arXiv IDcond-mat/0102130
P356DOI10.1016/S0006-3495(01)76164-4
P8608Fatcat IDrelease_df5vqbvvgvb6lbofj6xb7znhkq
P932PMC publication ID1301383
P698PubMed publication ID11259307
P5875ResearchGate publication ID12073944

P2093author name stringGelbart WM
Bruinsma R
Schiessel H
P2860cites workCrystal structure of the nucleosome core particle at 2.8 A resolutionQ22122355
Solenoidal model for superstructure in chromatinQ24561840
What determines the folding of the chromatin fiber?Q24602085
Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatinQ24652372
Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatinQ24681606
Pulling a single chromatin fiber reveals the forces that maintain its higher-order structureQ30830081
Direct detection of linker DNA bending in defined-length oligomers of chromatinQ33821984
Driving proteins off DNA using applied tensionQ33907672
Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopyQ35926293
The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbonQ36234105
Chromatin conformation and salt-induced compaction: three-dimensional structural information from cryoelectron microscopyQ36236348
A chromatin folding model that incorporates linker variability generates fibers resembling the native structuresQ36567800
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA moleculesQ36798786
A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cellsQ36820711
Toward a unified model of chromatin foldingQ38648054
Flexibility of DNA.Q39653493
Spermine-induced aggregation of DNA, nucleosome, and chromatinQ40149678
Self-assembly in vivoQ40162539
Chiral discotic columnar germs of nucleosome core particles.Q40164137
Modeling superhelical DNA: recent analytical and dynamic approaches.Q40467221
Chromatin higher order structure: chasing a mirage?Q40509200
Dinucleosomes show compaction by ionic strength, consistent with bending of linker DNA.Q47708879
Structure, dynamics, and function of chromatin in vitroQ47910966
DNA bending, flexibility, and helical repeat by cyclization kinetics.Q52432124
Mechanisms of stabilizing nucleosome structure. Study of dissociation of histone octamer from DNA.Q52525001
Variance of writhe for wormlike DNA rings with excluded volume.Q52540885
DNA: an extensible molecule.Q53991629
Pulling chromatin fibers: computer simulations of direct physical micromanipulationsQ57015866
Physicochemical studies of the folding of the 100 A nucleosome filament into the 300 A filament. Cation dependenceQ69666906
Polymer reptation and nucleosome repositioningQ73818559
Structure of the 300A chromatin filament: X-ray diffraction from oriented samplesQ93658325
P433issue4
P407language of work or nameEnglishQ1860
P1104number of pages17
P304page(s)1940-1956
P577publication date2001-04-01
P1433published inBiophysical JournalQ2032955
P1476titleDNA folding: structural and mechanical properties of the two-angle model for chromatin
P478volume80

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cites work (P2860)
Q50879281Antipolar and Anticlinic Mesophase Order in Chromatin Induced by Nucleosome Polarity and Chirality Correlations.
Q33364665Binding of DNA-bending non-histone proteins destabilizes regular 30-nm chromatin structure
Q42161009Choreography for nucleosomes: the conformational freedom of the nucleosomal filament and its limitations
Q90221574Chromatin Compaction Multiscale Modeling: A Complex Synergy Between Theory, Simulation, and Experiment
Q88301146Chromatin Higher-Order Folding: A Perspective with Linker DNA Angles
Q35183013Chromatin fibers, one-at-a-time
Q51642239Chromatin: a tunable spring at work inside chromosomes.
Q51832286Conformational properties of compact polymers.
Q36305583Crucial role of dynamic linker histone binding and divalent ions for DNA accessibility and gene regulation revealed by mesoscale modeling of oligonucleosomes
Q39305253DNA of a circular minichromosome linearized by restriction enzymes or other reagents is resistant to further cleavage: an influence of chromatin topology on the accessibility of DNA.
Q42586552Depletion effects massively change chromatin properties and influence genome folding
Q21562174Diffusion-Driven Looping Provides a Consistent Framework for Chromatin Organization
Q36273835Dynamic simulation of active/inactive chromatin domains
Q41779250Effect of capsid confinement on the chromatin organization of the SV40 minichromosome
Q33836463Electrostatic mechanism of nucleosomal array folding revealed by computer simulation
Q53216030Electrostatic theory of the assembly of PAMAM dendrimers and DNA.
Q34995401Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions
Q39888329Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams
Q34287511Expression-dependent folding of interphase chromatin
Q34680344Flexible histone tails in a new mesoscopic oligonucleosome model
Q43838369Force spectroscopy of chromatin fibers: extracting energetics and structural information from Monte Carlo simulations
Q90325395Genome Dashboards: Framework and Examples
Q87542053Global analysis of the ground-state wrapping conformation of a charged polymer on an oppositely charged nano-sphere
Q33905835Hierarchies in eukaryotic genome organization: Insights from polymer theory and simulations
Q41777561High-throughput chromatin motion tracking in living yeast reveals the flexibility of the fiber throughout the genome
Q34183811Higher-order structure of chromatin and chromosomes
Q38973166Histone depletion facilitates chromatin loops on the kilobasepair scale.
Q63980063Intercalation and buckling instability of DNA linker within locked chromatin fiber
Q36016884Internucleosomal interactions mediated by histone tails allow distant communication in chromatin
Q89977905Job Opening for Nucleosome Mechanic: Flexibility Required
Q34398588Local geometry and elasticity in compact chromatin structure
Q38973169Monte Carlo Simulations indicate that Chromati: Nanostructure is accessible by Light Microscopy
Q83373293Monte Carlo simulation of chromatin stretching
Q41832209Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation
Q41386556Nucleosome positioning and composition modulate in silico chromatin flexibility
Q40005967Nucleosome shape dictates chromatin fiber structure
Q53631626Polymer chain models of DNA and chromatin.
Q33796502Repulsive forces between looping chromosomes induce entropy-driven segregation
Q35133750Role of histone tails in chromatin folding revealed by a mesoscopic oligonucleosome model
Q84597981Salt-modulated structure of polyelectrolyte-macroion complex fibers
Q38314151Structural plasticity of single chromatin fibers revealed by torsional manipulation
Q79301531Systematic search for compact structures of telomeric nucleosomes
Q35768249The chromatin fiber: multiscale problems and approaches
Q42943386The effect of internucleosomal interaction on folding of the chromatin fiber
Q35246324The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms.
Q40800567The influence of the cylindrical shape of the nucleosomes and H1 defects on properties of chromatin

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