scholarly article | Q13442814 |
P50 | author | Dudley R. Herschbach | Q243196 |
Martin Karplus | Q903471 | ||
P2093 | author name string | Ioan Andricioaei | |
Anita Goel | |||
P2860 | cites work | Trapping of megabase-sized DNA molecules during agarose gel electrophoresis | Q34812946 |
Replication by a single DNA polymerase of a stretched single-stranded DNA | Q35364666 | ||
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules | Q36798786 | ||
Tuning DNA "strings": modulating the rate of DNA replication with mechanical tension | Q37101922 | ||
Force and kinetic barriers to unzipping of the DNA double helix | Q37107429 | ||
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant | Q38337038 | ||
Elementary steps in the DNA polymerase I reaction pathway | Q38354582 | ||
Function and structure relationships in DNA polymerases | Q40394926 | ||
Structural and functional insights provided by crystal structures of DNA polymerases and their substrate complexes. | Q41728302 | ||
Polymerase beta simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se. | Q42674308 | ||
Crystal structures of the Klenow fragment of Thermus aquaticus DNA polymerase I complexed with deoxyribonucleoside triphosphates | Q42846484 | ||
Force and Velocity Measured for Single Molecules of RNA Polymerase | Q52232915 | ||
Kinetic mechanism of DNA polymerase I(Klenow fragment): identification of a second conformational change and evaluation of the internal equilibrium constant | Q52449519 | ||
DNA: an extensible molecule | Q53991629 | ||
BASE FLIPPING | Q56256582 | ||
Molecular Dynamics Simulation of DNA Stretching Is Consistent with the Tension Observed for Extension and Strand Separation and Predicts a Novel Ladder Structure | Q57256074 | ||
Structure, force, and energy of a double-stranded DNA oligonucleotide under tensile loads | Q58846683 | ||
Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy | Q59069826 | ||
A unified formulation of the constant temperature molecular dynamics methods | Q59540413 | ||
Inertia and driving force of chemical reactions | Q63230004 | ||
Importance of oligoelectrolyte end effects for the thermodynamics of conformational transitions of nucleic acid oligomers: A grand canonical Monte Carlo analysis | Q67887690 | ||
Interaction of DNA polymerase I (Klenow fragment) with the single-stranded template beyond the site of synthesis | Q73034657 | ||
Getting a grip on how DNA polymerases function | Q74266456 | ||
Canonical dynamics: Equilibrium phase-space distributions | Q21709091 | ||
Structure-based design of Taq DNA polymerases with improved properties of dideoxynucleotide incorporation | Q24641853 | ||
Insight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes | Q27631543 | ||
Structure of the replicating complex of a pol alpha family DNA polymerase | Q27632340 | ||
Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP | Q27728960 | ||
Crystal structure of the large fragment of Thermus aquaticus DNA polymerase I at 2.5-A resolution: structural basis for thermostability | Q27729697 | ||
Crystal structure of Thermus aquaticus DNA polymerase | Q27729817 | ||
Structure of DNA polymerase I Klenow fragment bound to duplex DNA | Q27732134 | ||
Structure of Taq polymerase with DNA at the polymerase active site | Q27733244 | ||
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution | Q27748814 | ||
Visualizing DNA replication in a catalytically active Bacillus DNA polymerase crystal | Q27748815 | ||
VMD: visual molecular dynamics | Q27860554 | ||
Uracil-DNA glycosylase acts by substrate autocatalysis | Q28199337 | ||
Crystal structures of a ddATP-, ddTTP-, ddCTP, and ddGTP- trapped ternary complex of Klentaq1: insights into nucleotide incorporation and selectivity | Q28365676 | ||
Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes | Q29397708 | ||
Models for the Specific Adhesion of Cells to Cells | Q29616061 | ||
DNA replication fidelity | Q29616841 | ||
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. | Q29616842 | ||
A mechanism for all polymerases | Q29618812 | ||
DNA polymerases: structural diversity and common mechanisms | Q29619403 | ||
How DNA travels between the separate polymerase and 3'-5'-exonuclease sites of DNA polymerase I (Klenow fragment). | Q30381702 | ||
Sequence-dependent mechanics of single DNA molecules. | Q30670366 | ||
Unifying themes in DNA replication: reconciling single molecule kinetic studies with structural data on DNA polymerases | Q30673403 | ||
Unfolding proteins by external forces and temperature: the importance of topology and energetics | Q30872914 | ||
Polymerization and mechanical properties of single RecA-DNA filaments | Q31395922 | ||
DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase beta. Implication for the identity of the rate-limiting conformational change | Q31452230 | ||
Mechanical and chemical unfolding of a single protein: a comparison | Q33856547 | ||
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. | Q33893261 | ||
Dynamic strength of molecular adhesion bonds | Q33915225 | ||
Molecular dynamics study of unbinding of the avidin-biotin complex | Q33915230 | ||
Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions | Q33958912 | ||
Stress-induced structural transitions in DNA and proteins | Q34001391 | ||
Intermolecular forces and energies between ligands and receptors | Q34059684 | ||
Force-induced melting of the DNA double helix 1. Thermodynamic analysis | Q34174994 | ||
P433 | issue | 3 | |
P407 | language of work or name | English | Q1860 |
P1104 | number of pages | 20 | |
P304 | page(s) | 1478-1497 | |
P577 | publication date | 2004-09-01 | |
P1433 | published in | Biophysical Journal | Q2032955 |
P1476 | title | Dependence of DNA polymerase replication rate on external forces: a model based on molecular dynamics simulations | |
P478 | volume | 87 |
Q58691085 | An Approach to Visualize the Deformation of the Intermediate Filament Cytoskeleton in Response to Locally Applied Forces |
Q55209661 | Computational study of the force dependence of phosphoryl transfer during DNA synthesis by a high fidelity polymerase |
Q39511108 | Dynamics of DNA polymerase I (Klenow fragment) under external force |
Q45733380 | First-passage problems in DNA replication: effects of template tension on stepping and exonuclease activities of a DNA polymerase motor |
Q35333630 | Free-energy landscape and characteristic forces for the initiation of DNA unzipping |
Q37237343 | Harnessing biological motors to engineer systems for nanoscale transport and assembly |
Q41384384 | Minimalist model for force-dependent DNA replication |
Q84169381 | Off-equilibrium response of grafted polymer chains subject to a variable rate of compression |
Q46107382 | Rate turnover in mechano-catalytic coupling: A model and its microscopic origin. |
Q92989913 | Replicative DNA polymerases promote active displacement of SSB proteins during lagging strand synthesis |
Q24814522 | Rotation of DNA around intact strand in human topoisomerase I implies distinct mechanisms for positive and negative supercoil relaxation |
Q41089391 | Single-molecule mechanochemical characterization of E. coli pol III core catalytic activity. |
Q41954255 | Single-molecule study of DNA polymerization activity of HIV-1 reverse transcriptase on DNA templates |
Q36288580 | Structure and mechanism of DNA polymerases |
Q27659793 | The Mechanism of the Translocation Step in DNA Replication by DNA Polymerase I: A Computer Simulation Analysis |
Search more.