Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases

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Hinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1529/BIOPHYSJ.104.054916
P932PMC publication ID1305493
P698PubMed publication ID15722438
P5875ResearchGate publication ID8011886

P50authorNeocles LeontisQ30508582
Jaroslav KočaQ39934705
Jirí SponerQ56046924
P2093author name stringFilip Rázga
P2860cites workA common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNPQ24290525
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The complete atomic structure of the large ribosomal subunit at 2.4 A resolutionQ27626400
Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolutionQ27627220
Structure of the 30S ribosomal subunitQ27627261
Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragmentQ27629324
Crystal structure of the ribosome at 5.5 A resolutionQ27630949
The kink-turn: a new RNA secondary structure motifQ27633834
High resolution structure of the large ribosomal subunit from a mesophilic eubacteriumQ27636568
Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation processQ27639298
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Understanding discrimination by the ribosome: stability testing and groove measurement of codon-anticodon pairsQ73234161
A structural model for the assembly of the 30S subunit of the ribosomeQ73234165
Structure of the Sm binding site from human U4 snRNA derived from a 3 ns PME molecular dynamics simulationQ73374762
A molecular dynamics simulation study of coaxial stacking in RNAQ73374764
Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloopQ73514564
Simulation of the structure and dynamics of nonhelical RNA motifsQ73889014
Molecular dynamics investigations of hammerhead ribozyme RNAQ74196956
RNA solvation: a molecular dynamics simulation perspectiveQ77381565
Locking and unlocking of ribosomal motionsQ27641675
Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopyQ27642372
VMD: visual molecular dynamicsQ27860554
Molecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solutionQ28344478
Essential dynamics of proteinsQ29616843
A ratchet-like inter-subunit reorganization of the ribosome during translocationQ29619258
Nucleic acids: theory and computer simulation, Y2K.Q30589123
Molecular dynamics simulations of RNA kissing-loop motifs reveal structural dynamics and formation of cation-binding pocketsQ30884437
Molecular dynamics simulation reveals conformational switching of water-mediated uracil-cytosine base-pairs in an RNA duplexQ31852650
Long-residency hydration, cation binding, and dynamics of loop E/helix IV rRNA-L25 protein complexQ33206283
Non-Watson-Crick basepairing and hydration in RNA motifs: molecular dynamics of 5S rRNA loop E.Q34181373
Formation pathways of a guanine-quadruplex DNA revealed by molecular dynamics and thermodynamic analysis of the substatesQ34182722
Single-particle imaging of macromolecules by cryo-electron microscopyQ34623606
Simulations of nucleic acids and their complexesQ34691098
Molecular dynamics applied to nucleic acidsQ34691218
Electron microscopy of functional ribosome complexesQ35053979
Importance of discriminator base stacking interactions: molecular dynamics analysis of A73 microhelix(Ala) variants.Q39543132
Biochemical characterization of the kink-turn RNA motif.Q39936148
Conformational dynamics of a 5S rRNA hairpin domain containing loop D and a single nucleotide bulgeQ40169620
Molecular dynamics simulations of solvated yeast tRNA(Asp).Q40222512
Simulations of the molecular dynamics of nucleic acidsQ40854985
The kink-turn motif in RNA is dimorphic, and metal ion-dependentQ42087942
Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfoldingQ43793377
Symmetric K+ and Mg2+ ion-binding sites in the 5S rRNA loop E inferred from molecular dynamics simulationsQ44691251
Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 A resolutionQ47640330
Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA.Q47640445
Ribosomal RNA Kink-turn Motif—A Flexible Molecular HingeQ62140954
P433issue5
P407language of work or nameEnglishQ1860
P304page(s)3466-3485
P577publication date2005-02-18
P1433published inBiophysical JournalQ2032955
P1476titleHinge-like motions in RNA kink-turns: the role of the second a-minor motif and nominally unpaired bases
P478volume88

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