Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure–function results for the Schellman loop

scientific article published on October 28, 2011

Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure–function results for the Schellman loop is …
instance of (P31):
scholarly articleQ13442814

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P8978DBLP publication IDjournals/bioinformatics/Newell11
P356DOI10.1093/BIOINFORMATICS/BTR594
P953full work available at URLhttps://academic.oup.com/bioinformatics/article-pdf/27/24/3415/16903140/btr594.pdf
https://academic.oup.com/bioinformatics/article-pdf/27/24/3415/48861470/bioinformatics_27_24_3415.pdf
P698PubMed publication ID22039211
P5875ResearchGate publication ID51753781

P2093author name stringNicholas E. Newell
P2860cites workA review of feature selection techniques in bioinformaticsQ36919689
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How to find simple and accurate rules for viral protease cleavage specificities.Q37233754
Second generation HIV protease inhibitors against resistant virusQ38089895
Human immunodeficiency virus, type 1 protease substrate specificity is limited by interactions between substrate amino acids bound in adjacent enzyme subsitesQ45771086
The hydrophobic-staple motif and a role for loop-residues in α-helix stability and protein foldingQ52342671
Gene Selection for Cancer Classification using Support Vector MachinesQ56535529
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Maximum Likelihood in Three-Way Contingency TablesQ128833553
Motivated proteins: a web application for studying small three-dimensional protein motifsQ21284366
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple TestingQ24570129
Active human immunodeficiency virus protease is required for viral infectivityQ24647696
MSDmotif: exploring protein sites and motifsQ24652696
Helix cappingQ24673351
On the size of the active site in proteases. I. PapainQ27860826
Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sitesQ33337380
Comprehensive bioinformatic analysis of the specificity of human immunodeficiency virus type 1 proteaseQ33984365
Defining HIV-1 protease substrate selectivityQ35014502
Probing the roles of residues at the e and g positions of the GCN4 leucine zipper by combinatorial mutagenesis.Q36278084
P433issue24
P407language of work or nameEnglishQ1860
P304page(s)3415-3422
P577publication date2011-10-28
P1433published inBioinformaticsQ4914910
P1476titleCascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure-function results for the Schellman loop
Cascade detection for the extraction of localized sequence features; specificity results for HIV-1 protease and structure–function results for the Schellman loop
P478volume27

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cites work (P2860)
Q90707542Bi-allelic ADARB1 Variants Associated with Microcephaly, Intellectual Disability, and Seizures
Q34434040Bridging of anions by hydrogen bonds in nest motifs and its significance for Schellman loops and other larger motifs within proteins
Q34699655Cleavage entropy as quantitative measure of protease specificity
Q30377151Mapping side chain interactions at protein helix termini.
Q36268655Prediction of HIV-1 protease cleavage site using a combination of sequence, structural, and physicochemical features
Q41693960State of the art prediction of HIV-1 protease cleavage sites
Q41897739The importance of physicochemical characteristics and nonlinear classifiers in determining HIV-1 protease specificity

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