Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification

scientific article

Visualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/AEM.71.12.7933-7940.2005
P932PMC publication ID1317385
P698PubMed publication ID16332770
P5875ResearchGate publication ID7436399

P2093author name stringFumito Maruyama
Katsuji Tani
Masao Nasu
Nobuyasu Yamaguchi
Takehiko Kenzaka
P2860cites workAmplification of padlock probes for DNA diagnostics by cascade rolling circle amplification or the polymerase chain reactionQ40914343
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Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by bacteria and Archaea in the deep ocean.Q41031274
Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.Q42645426
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Involvement of rpoS in the survival of Escherichia coli in the viable but non‐culturable stateQ44597047
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Transformation of colonial Escherichia coli on solid media.Q51658326
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Subcellular localization of plasmids containing the oriC region of the Escherichia coli chromosome, with or without the sopABC partitioning systemQ73189468
In situ detection of a virulence factor mRNA and 16S rRNA in Listeria monocytogenesQ74291631
DNA as a Nutrient: Novel Role for Bacterial Competence Gene HomologsQ22065463
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteriaQ24536329
Single-cell microbiology: tools, technologies, and applicationsQ24562808
Bacterial gene transfer by natural genetic transformation in the environmentQ24634610
Phylogenetic identification and in situ detection of individual microbial cells without cultivationQ24651527
High-throughput genotyping of single nucleotide polymorphisms with rolling circle amplificationQ24802380
DNA uptake in bacteriaQ28146170
High rates of conjugation in bacterial biofilms as determined by quantitative in situ analysisQ30746286
Simplified sample preparation using frame spotting method for direct counting of total bacteria by fluorescence microscopy.Q31121217
Development of a direct in situ PCR method for detection of specific bacteria in natural environmentsQ32067619
In situ reverse transcription-PCR for monitoring gene expression in individual Methanosarcina mazei S-6 cellsQ33588765
Simultaneous direct counting of total and specific microbial cells in seawater, using a deep-sea microbe as targetQ33590374
Bacterial viability and culturabilityQ33740386
Detection of DNA point mutations and mRNA expression levels by rolling circle amplification in individual cellsQ33951753
Natural genetic transformation of clinical isolates of Escherichia coli in urine and waterQ34097581
Survival strategies of bacteria in the natural environment.Q34173787
Prolonged incubation in calcium chloride improves the competence of Escherichia coli cellsQ34192132
Fluorescence in situ hybridisation for the identification and characterisation of prokaryotesQ35165315
Genetic transformation in freshwater: Escherichia coli is able to develop natural competenceQ35193810
Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplificationQ35210119
Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteriaQ37552842
Identification of bacterial cells by chromosomal painting.Q38505331
Identification and characterization of a newly isolated shiga toxin 2-converting phage from shiga toxin-producing Escherichia coli.Q39572745
Monitoring of Ralstonia eutropha KT1 in groundwater in an experimental bioaugmentation field by in situ PCR.Q39649326
Natural genetic transformation in monoculture Acinetobacter sp. strain BD413 biofilmsQ39734470
An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridizationQ39750614
Visualization of specific gene expression in individual Salmonella typhimurium cells by in situ PCR.Q39803321
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectvisualizationQ451553
P304page(s)7933-7940
P577publication date2005-12-01
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleVisualization and enumeration of bacteria carrying a specific gene sequence by in situ rolling circle amplification
P478volume71

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cites work (P2860)
Q38344717Detection of denitrification genes by in situ rolling circle amplification-fluorescence in situ hybridization to link metabolic potential with identity inside bacterial cells.
Q35759221Detection of low-copy-number genomic DNA sequences in individual bacterial cells by using peptide nucleic acid-assisted rolling-circle amplification and fluorescence in situ hybridization
Q51282030Direct-geneFISH: a simplified protocol for the simultaneous detection and quantification of genes and rRNA in microorganisms.
Q60347019Enzyme-free synthesis of cyclic single-stranded DNA constructs containing a single triazole, amide or phosphoramidate backbone linkage and their use as templates for rolling circle amplification and nanoflower formation
Q82593048High-frequency phage-mediated gene transfer in freshwater environments determined at single-cell level
Q35023461Quantitative determination of free-DNA uptake in river bacteria at the single-cell level by in situ rolling-circle amplification
Q88459288Research Progress on Rolling Circle Amplification (RCA)-Based Biomedical Sensing
Q29543898Rolling circle amplification: a versatile tool for chemical biology, materials science and medicine
Q37139309Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques.
Q37934584Strategies for highly sensitive biomarker detection by Rolling Circle Amplification of signals from nucleic acid composed sensors.
Q41436284Transfer of a phage T4 gene into Enterobacteriaceae, determined at the single-cell level

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