Genome organization and characteristics of soybean microRNAs

scientific article

Genome organization and characteristics of soybean microRNAs is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1023445149
P356DOI10.1186/1471-2164-13-169
P932PMC publication ID3481472
P698PubMed publication ID22559273
P5875ResearchGate publication ID224911861

P2093author name stringOliver Yu
Marie Turner
Senthil Subramanian
P2860cites workGenome sequence of the palaeopolyploid soybeanQ22122200
Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genesQ24537363
MicroRNAs: target recognition and regulatory functionsQ24609584
PMRD: plant microRNA databaseQ24644711
MicroRNAs in plantsQ24674274
The neighbor-joining method: a new method for reconstructing phylogenetic treesQ25939010
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0Q26778434
MicroRNAs: genomics, biogenesis, mechanism, and functionQ27861070
Prediction of plant microRNA targetsQ28219387
MicroRNAS and their regulatory roles in plantsQ28237934
Computational identification of plant microRNAs and their targets, including a stress-induced miRNAQ28267244
Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)Q28748780
Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteinsQ28749147
Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genusQ28751812
Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and ArabidopsisQ28776602
Circos: an information aesthetic for comparative genomicsQ29547653
Prospects for inferring very large phylogenies by using the neighbor-joining methodQ29616217
microRNA-directed phasing during trans-acting siRNA biogenesis in plantsQ29618562
A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thalianaQ29618639
A genome-wide characterization of microRNA genes in maizeQ30912253
Identification of miRNAs and their target genes in developing soybean seeds by deep sequencingQ30995522
Novel and stress-regulated microRNAs and other small RNAs from ArabidopsisQ31095568
MicroRNA166 controls root and nodule development in Medicago truncatula.Q31147640
Novel and nodulation-regulated microRNAs in soybean roots.Q33327595
MtHAP2-1 is a key transcriptional regulator of symbiotic nodule development regulated by microRNA169 in Medicago truncatulaQ33343414
Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodulesQ33347859
MicroRNAs in the shoot apical meristem of soybean.Q33351028
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA familiesQ33391570
Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodulesQ33393154
Members of miR-169 family are induced by high salinity and transiently inhibit the NF-YA transcription factorQ33427681
Conserved and novel miRNAs in the legume Phaseolus vulgaris in response to stressQ33427940
Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA familiesQ33474537
Prediction of novel miRNAs and associated target genes in Glycine max.Q33528180
Structure and activity of putative intronic miRNA promotersQ33658452
A potential role for intragenic miRNAs on their hosts' interactome.Q33710067
Identification of novel soybean microRNAs involved in abiotic and biotic stresses.Q33929648
A two-hit trigger for siRNA biogenesis in plantsQ34000679
22-Nucleotide RNAs trigger secondary siRNA biogenesis in plantsQ34093679
siRNAs from miRNA sites mediate DNA methylation of target genesQ34298170
Chromosome-level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome mapsQ34587898
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formationQ34761848
Rice MicroRNA effector complexes and targetsQ35012254
Genetic analysis reveals functional redundancy and the major target genes of the Arabidopsis miR159 familyQ36092661
MicroRNA biogenesis and function in plantsQ36250139
Protocol: a highly sensitive RT-PCR method for detection and quantification of microRNAsQ36426586
Reconstituting plant miRNA biogenesisQ36786965
Intronic noncoding RNAs and splicing.Q37191801
Small RNAs and their roles in plant development.Q37470177
MicroRNAs in the rhizobia legume symbiosisQ37605440
Plant microRNAs: An insight into their gene structures and evolutionQ37778422
MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs.Q39923825
Methylation as a crucial step in plant microRNA biogenesisQ42119452
Genome duplication in soybean (Glycine subgenus soja).Q42966949
Misexpression of miR482, miR1512, and miR1515 increases soybean nodulation.Q43052204
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plantsQ43090452
MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thalianaQ43091562
DNA methylation mediated by a microRNA pathwayQ43104318
MicroRNA expression profile in common bean (Phaseolus vulgaris) under nutrient deficiency stresses and manganese toxicityQ45130793
Molecular and chromosomal evidence for allopolyploidy in soybeanQ45139934
Criteria for annotation of plant MicroRNAsQ45753629
Redundancy and specialization among plant microRNAs: role of the MIR164 family in developmental robustness.Q46311171
Identification of soybean microRNAs and their targetsQ46348295
Conservation and divergence of plant microRNA genes.Q48091519
MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root developmentQ48142660
Specific Effects of MicroRNAs on the Plant TranscriptomeQ57167516
A Plant miRNA Contributes to Antibacterial Resistance by Repressing Auxin SignalingQ57748263
MicroRNA evolution in the genus ArabidopsisQ61441241
Endogenous isoflavones are essential for the establishment of symbiosis between soybean and Bradyrhizobium japonicumQ79180805
Molecular evolution of the rice miR395 gene familyQ81103691
P407language of work or nameEnglishQ1860
P921main subjectmicroRNAQ310899
P304page(s)169
P577publication date2012-05-04
P1433published inBMC GenomicsQ15765854
P1476titleGenome organization and characteristics of soybean microRNAs
P478volume13

Reverse relations

cites work (P2860)
Q33356365Characterization and evolution of conserved MicroRNA through duplication events in date palm (Phoenix dactylifera).
Q41507162Conservation and divergence of small RNA pathways and microRNAs in land plants.
Q36265327Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s
Q40127761Downregulation of genes coding for core RNAi components and disease resistance proteins via corresponding microRNAs might be correlated with successful SMV infection in soybean
Q33732235Ensemble-based classification approach for micro-RNA mining applied on diverse metagenomic sequences
Q35275266Evolution and genomic organization of muscle microRNAs in fish genomes
Q37027212Genome-Wide Transcriptional Profile Analysis of Prunus persica in Response to Low Sink Demand after Fruit Removal
Q34370942Genome-wide discovery and differential regulation of conserved and novel microRNAs in chickpea via deep sequencing
Q40083978Genome-wide identification and characterization of microRNA genes and their targets in flax (Linum usitatissimum): Characterization of flax miRNA genes
Q34762904Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean
Q34569583Genome-wide identification of soybean microRNAs and their targets reveals their organ-specificity and responses to phosphate starvation
Q35658904Genome-wide identification of the Phaseolus vulgaris sRNAome using small RNA and degradome sequencing
Q35664748Identification and Characterization of Novel Maize Mirnas Involved in Different Genetic Background
Q34565938Identification and Dynamic Regulation of microRNAs Involved in Salt Stress Responses in Functional Soybean Nodules by High-Throughput Sequencing
Q35074365Identification and comparative analysis of cadmium tolerance-associated miRNAs and their targets in two soybean genotypes
Q35631379Identification and functional characterization of soybean root hair microRNAs expressed in response to Bradyrhizobium japonicum infection.
Q36027528Identification of chilling-responsive microRNAs and their targets in vegetable soybean (Glycine max L.).
Q35884775Identification of miRNAs and their targets by high-throughput sequencing and degradome analysis in cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B of soybean
Q41200844Identification of microRNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation.
Q52631133In silico identification of microRNAs predicted to regulate N-myristoyltransferase and Methionine Aminopeptidase 2 functions in cancer and infectious diseases.
Q92340010Legume genomics and transcriptomics: From classic breeding to modern technologies
Q26849760Legume genomics: understanding biology through DNA and RNA sequencing
Q39032329Nitrogen sensing in legumes.
Q34428879Novel miRNA and phasiRNA biogenesis networks in soybean roots from two sister lines that are resistant and susceptible to SCN race 4.
Q33559417Regulation of Isoflavone Biosynthesis by miRNAs in Two Contrasting Soybean Genotypes at Different Seed Developmental Stages
Q36043562Regulation of Small RNAs and Corresponding Targets in Nod Factor-Induced Phaseolus vulgaris Root Hair Cells
Q37472852Roles of small RNAs in soybean defense against Phytophthora sojae infection.
Q36998614Small RNA pathways and diversity in model legumes: lessons from genomics.
Q41893924Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
Q58790032The MicroRNA319d/TCP10 Node Regulates the Common Bean - Rhizobia Nitrogen-Fixing Symbiosis
Q38466141The micro-RNA72c-APETALA2-1 node as a key regulator of the common bean-Rhizobium etli nitrogen fixation symbiosis.
Q28661753Trans-acting small interfering RNA4: key to nutraceutical synthesis in grape development?
Q33701657Transcriptome-Wide Analysis of Botrytis elliptica Responsive microRNAs and Their Targets in Lilium Regale Wilson by High-Throughput Sequencing and Degradome Analysis
Q34446562Two microRNAs linked to nodule infection and nitrogen-fixing ability in the legume Lotus japonicus
Q31132669Using genomic information to improve soybean adaptability to climate change.
Q50569351microRNA160 dictates stage-specific auxin and cytokinin sensitivities and directs soybean nodule development.