Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics

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Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1128/AEM.02004-14
P932PMC publication ID4178631
P698PubMed publication ID25107967
P5875ResearchGate publication ID264632143

P50authorChristian MilaniQ56950812
Douwe van SinderenQ57025338
Francesca TurroniQ39856644
Marco VenturaQ39856687
Gabriele Andrea LugliQ42320887
Sabrina DurantiQ42320891
Marta MangifestaQ56642371
P2093author name stringAlice Viappiani
Chiara Ferrario
Leonardo Mancabelli
Bernard Taminiau
Véronique Delcenserie
P2860cites workGenome trees constructed using five different approaches suggest new major bacterial cladesQ21284133
Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gutQ21560766
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Genome phylogeny based on gene contentQ29617415
Bifidobacterium thermacidophilum sp. nov., isolated from an anaerobic digesterQ30596683
Identification of optimum sequencing depth especially for de novo genome assembly of small genomes using next generation sequencing dataQ30617713
From complete genomes to measures of substitution rate variability within and between proteinsQ30651543
Universal trees based on large combined protein sequence data sets.Q30655328
Bifidobacterium moukalabense sp. nov., isolated from the faeces of wild west lowland gorilla (Gorilla gorilla gorilla).Q30683857
Bifidobacterium scardovii sp. nov., from human sourcesQ30697121
Phylogenomic analysis of natural selection pressure in Streptococcus genomesQ30833778
Bifidobacterium psychraerophilum sp. nov. and Aeriscardovia aeriphila gen. nov., sp. nov., isolated from a porcine caecumQ30912593
Description of a new species, Bifidobacterium crudilactis sp. nov., isolated from raw milk and raw milk cheesesQ31102711
Bifidobacterium tsurumiense sp. nov., from hamster dental plaqueQ31142005
The bacterial species definition in the genomic era.Q33261434
Human gut microbiota and bifidobacteria: from composition to functionalityQ33323616
Bifidobacterium mongoliense sp. nov., from airag, a traditional fermented mare's milk product from MongoliaQ33462573
Bifidobacterium bombi sp. nov., from the bumblebee digestive tractQ33476637
Bifidobacterium ruminantium sp. nov. and Bifidobacterium merycicum sp. nov. from the rumens of cattleQ33516943
The Bifidobacterium dentium Bd1 genome sequence reflects its genetic adaptation to the human oral cavityQ33521289
Bifidobacterium stercoris sp. nov., isolated from human faecesQ33524739
Phylogeny determined by protein domain contentQ33595175
Bifidobacterium actinocoloniiforme sp. nov. and Bifidobacterium bohemicum sp. nov., from the bumblebee digestive tractQ33639794
Bifidobacterium kashiwanohense sp. nov., isolated from healthy infant faecesQ33767880
Genomic insights that advance the species definition for prokaryotesQ33850939
Bifidobacterium reuteri sp. nov., Bifidobacterium callitrichos sp. nov., Bifidobacterium saguini sp. nov., Bifidobacterium stellenboschense sp. nov. and Bifidobacterium biavatii sp. nov. isolated from faeces of common marmoset (Callithrix jacchus) aQ34120861
Bifidobacterium gallicum sp. nov. isolated from human fecesQ34124111
The species concept for prokaryotesQ34127826
International Committee on Systematic Bacteriology: announcement of the report of the ad hoc Committee on Reconciliation of Approaches to Bacterial SystematicsQ34170127
Genomic encyclopedia of type strains of the genus BifidobacteriumQ34261147
Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foragingQ34320513
Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspectiveQ34629039
The genomic tree as revealed from whole proteome comparisonsQ35023050
Sequence Divergence, Functional Constraint, and Selection in Protein EvolutionQ35550628
PGAP: pan-genomes analysis pipelineQ35708459
Bifidobacterium pullorum sp. nov.: a new species isolated from chicken feces and a related group of bifidobacteria isolated from rabbit fecesQ36533326
New species of bifid bacteria from Apis mellifica L. and Apis indica F. A contribution to the taxonomy and biochemistry of the genus BifidobacteriumQ36535671
Bifidobacterium suis n. sp.: a new species of the genus Bifidobacterium isolated from pig fecesQ36547058
Bifid bacteria in bovine rumen. New species of the genus Bifidobacterium: B. globosum n.sp. and B. ruminale n.spQ36555472
Evaluation of six methods for estimating synonymous and nonsynonymous substitution ratesQ37318249
The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium TaxonQ37596960
Bifidobacteria and humans: our special friends, from ecological to genomics perspectivesQ38130478
Whole genome-based phylogenetic analysis of free-living microorganismsQ39729408
Lactobacillus phylogenomics--towards a reclassification of the genusQ40021012
Species identification of genus Bifidobacterium based on partial HSP60 gene sequences and proposal of Bifidobacterium thermacidophilum subsp. porcinum subsp. nov.Q43034355
A genomic distance based on MUM indicates discontinuity between most bacterial species and genera.Q43215115
Reclassification of Bifidobacterium stercoris Kim et al. 2010 as a later heterotypic synonym of Bifidobacterium adolescentisQ43428094
How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identityQ43731813
Phylogenetic trees based on gene contentQ43767229
Analysis of bifidobacterial evolution using a multilocus approachQ45316972
Comparative studies on bifidobacteria isolated from the alimentary tract of man and animals (including descriptions of bifidobacterium thermophilum nov. spec. and bifidobacterium pseudolongum nov. spec)Q46263308
Whole proteome prokaryote phylogeny without sequence alignment: a K-string composition approachQ48208468
COMPARATIVE STUDIES ON THE BIFIDUS FLORA IN THE FECES OF INFANTS AND ADULTS. WITH A CONTRIBUTION TO CLASSIFICATION AND NOMENCLATURE OF BIFIDUS STRAINSQ50734878
P433issue20
P407language of work or nameEnglishQ1860
P921main subjectcomparative genomicsQ1147112
P304page(s)6383-6394
P577publication date2014-08-08
P1433published inApplied and Environmental MicrobiologyQ4781593
P1476titleInvestigation of the evolutionary development of the genus Bifidobacterium by comparative genomics
P478volume80

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