An assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology

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An assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/PMIC.201100571
P932PMC publication ID3857306
P698PubMed publication ID22577019

P50authorUlrike KusebauchQ63248016
P2093author name stringCaroline S Chu
Robert L Moritz
Julian D Watts
Mark J Sartain
Mi-Youn K Brusniak
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Platform for Establishing Interlaboratory Reproducibility of Selected Reaction Monitoring-Based Mass Spectrometry Peptide AssaysQ57941143
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Systematic quantification of peptides/proteins in urine using selected reaction monitoringQ83500198
Multiple reaction monitoring cubed for protein quantification at the low nanogram/milliliter level in nondepleted human serumQ84746102
Assay development for the determination of phosphorylation stoichiometry using multiple reaction monitoring methods with and without phosphatase treatment: application to breast cancer signaling pathwaysQ28397338
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An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics dataQ31141751
MRMer, an interactive open source and cross-platform system for data extraction and visualization of multiple reaction monitoring experimentsQ31163848
Method development aspects for the quantitation of pharmaceutical compounds in human plasma with a matrix-assisted laser desorption/ionization source in the multiple reaction monitoring modeQ33273404
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomicsQ33674206
Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry.Q33775524
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Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteinsQ34473545
Evaluation of large scale quantitative proteomic assay development using peptide affinity-based mass spectrometryQ34751690
Proteome and transcriptome profiles of a Her2/Neu-driven mouse model of breast cancerQ34754750
Hydroxyproline-containing dipeptides and tripeptides quantified at high concentration in human blood after oral administration of gelatin hydrolysateQ35016010
Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networksQ35749545
Protein significance analysis in selected reaction monitoring (SRM) measurementsQ35878777
Targeted quantitative analysis of Streptococcus pyogenes virulence factors by multiple reaction monitoringQ36808448
Selected reaction monitoring for quantitative proteomics: a tutorialQ36973024
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Halogenated peptides as internal standards (H-PINS): introduction of an MS-based internal standard set for liquid chromatography-mass spectrometryQ37294423
Multiple reaction monitoring-based, multiplexed, absolute quantitation of 45 proteins in human plasmaQ37294438
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Selected reaction monitoring applied to proteomics.Q37851918
P433issue8
P921main subjectbioinformaticsQ128570
P304page(s)1176-1184
P577publication date2012-04-01
P1433published inProteomicsQ15614164
P1476titleAn assessment of current bioinformatic solutions for analyzing LC-MS data acquired by selected reaction monitoring technology
P478volume12

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