Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains

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Comparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1021342088
P356DOI10.1186/1471-2180-12-88
P932PMC publication ID3511179
P698PubMed publication ID22646228
P5875ResearchGate publication ID225078101

P50authorJohn I GlassQ58481240
Shibu YoosephQ60639037
Susmita ShrivastavaQ56810704
P2093author name stringLi Xiao
Gail H Cassell
Jin Lu
Barbara A Methé
Ken B Waites
Donna M Crabb
Lynn B Duffy
Vanya Paralanov
Jason Inman
P2860cites workDendroscope: An interactive viewer for large phylogenetic treesQ21284219
Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.Q22065998
Exclusive occurrence of an extracellular protease capable of cleaving the hinge region of human immunoglobulin A1 in strains of Ureaplasma urealyticumQ58234755
Immunoglobulin A1 protease activity in strains of Ureaplasma urealyticumQ58234771
The recovery of pleuropneumonia-like organisms from Negro men with and without nongonococcal urethritisQ73427840
Critical evaluation of p-nitrophenylphosphorylcholine (p-NPPC) as artificial substrate for the detection of phospholipase C*Q73538825
Relationship of Ureaplasma urealyticum biovars to the presence or absence of bacterial vaginosis in pregnant women and to the time of deliveryQ73602805
A unique, bifunctional site-specific DNA recombinase from Mycoplasma pulmonisQ78487571
The complete sequence of the mucosal pathogen Ureaplasma urealyticumQ22122390
Gene ontology: tool for the unification of biologyQ23781406
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequenceQ24544402
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Species identification and subtyping of Ureaplasma parvum and Ureaplasma urealyticum using PCR-based assaysQ24551171
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequencesQ24634141
The Pfam protein families databaseQ24644670
Jalview Version 2--a multiple sequence alignment editor and analysis workbenchQ24655519
Rfam: an RNA family databaseQ24682045
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomesQ24683561
TRDB--the Tandem Repeats DatabaseQ24683650
Improved microbial gene identification with GLIMMERQ27860463
Clustal W and Clustal X version 2.0Q27860517
Characterization of phospholipase A1, A2, C activity in Ureaplasma urealyticum membranesQ28142365
A greedy algorithm for aligning DNA sequencesQ29547622
Phylogenetic analysis of Ureaplasma urealyticum--support for the establishment of a new species, Ureaplasma parvumQ30584200
Proposal of Ureaplasma parvum sp. nov. and emended description of Ureaplasma urealyticum (Shepard et al. 1974) Robertson et al. 2001.Q30685042
Identification of genes associated with mutacin I production in Streptococcus mutans using random insertional mutagenesisQ33229034
Identification of Mycobacterium marinum macrophage infection mutants.Q33232859
Invasion of Ureaplasma diversum in Hep-2 cellsQ33541753
Detection and characterization of human Ureaplasma species and serovars by real-time PCR.Q33606748
Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regionsQ33693333
Differentiation of two biovars of Ureaplasma urealyticum based on the 16S-23S rRNA intergenic spacer regionQ33964366
Mycoplasmas and ureaplasmas as neonatal pathogensQ34097662
TraG-like proteins of DNA transfer systems and of the Helicobacter pylori type IV secretion system: inner membrane gate for exported substrates?Q34311340
Mycoplasma pneumoniae Mpn133 is a cytotoxic nuclease with a glutamic acid-, lysine- and serine-rich region essential for binding and internalization but not enzymatic activityQ34455796
Congenital and opportunistic infections: Ureaplasma species and Mycoplasma hominisQ34910820
Extensive horizontal gene transfer in ureaplasmas from humans questions the utility of serotyping for diagnostic purposesQ35139701
Isolation of human eosinophil phospholipase DQ35200601
Epitope mapping of the variable repetitive region with the MB antigen of Ureaplasma urealyticum.Q35228358
Small repeating units within the Ureaplasma urealyticum MB antigen gene encode serovar specificity and are associated with antigen size variationQ35392223
Mycoplasma pneumoniae and its role as a human pathogenQ35920629
Differential association of ureaplasma species with non-gonococcal urethritis in heterosexual men.Q36236667
Association of Ureaplasma urealyticum biovars with clinical outcome for neonates, obstetric patients, and gynecological patients with pelvic inflammatory diseaseQ36575535
A family of phase-variable restriction enzymes with differing specificities generated by high-frequency gene rearrangementsQ36812335
Probiotics for the treatment of women with bacterial vaginosisQ36883023
Serotype diversity and antigen variation among invasive isolates of Ureaplasma urealyticum from neonatesQ36950148
Polymerase chain reaction using 16S rRNA gene sequences distinguishes the two biovars of Ureaplasma urealyticumQ37083449
Comparison of PCR with culture for detection of Ureaplasma urealyticum in clinical samples from patients with urogenital infectionsQ37091480
Endogenous activity of phospholipases A and C in Ureaplasma urealyticumQ37202366
Localization of endogenous activity of phospholipases A and C in Ureaplasma urealyticumQ37240155
Immunoglobulin A protease activity of Ureaplasma urealyticumQ37260960
Expanded serotyping scheme for Ureaplasma urealyticum strains isolated from humans.Q37292442
Modified metabolic inhibition test for serotyping strains of Ureaplasma urealyticum (T-strain Mycoplasma)Q37366854
Hidden Markov model and its applications in motif findingsQ37774926
Detection of Mycoplasma genitalium, Mycoplasma hominis, Ureaplasma parvum (biovar 1) and Ureaplasma urealyticum (biovar 2) in patients with non-gonococcal urethritis using polymerase chain reaction-microtiter plate hybridizationQ37866431
Association of Ureaplasma urealyticum (biovar 2) with nongonococcal urethritisQ37867387
The hsd loci of Mycoplasma pulmonis: organization, rearrangements and expression of genesQ38340657
The integration site of the iga gene in commensal Neisseria spQ38355185
The large resolvase TndX is required and sufficient for integration and excision of derivatives of the novel conjugative transposon Tn5397.Q39587890
Ureaplasma parvum lipoproteins, including MB antigen, activate NF-{kappa}B through TLR1, TLR2 and TLR6.Q39986398
Sybil: methods and software for multiple genome comparison and visualizationQ40117730
A neutral glycoprotease of Pasteurella haemolytica A1 specifically cleaves O-sialoglycoproteinsQ40148484
Rapid screening assay for phospholipase C activity in mycoplasmasQ40190358
The Neisseria type 2 IgA1 protease cleaves LAMP1 and promotes survival of bacteria within epithelial cellsQ41106845
Adherence of Ureaplasma urealyticum to human epithelial cells.Q41437337
Nicking by transesterification: the reaction catalysed by a relaxaseQ41627061
Ureaplasma antigenic variation beyond MBA phase variation: DNA inversions generating chimeric structures and switching in expression of the MBA N-terminal paralogue UU172.Q41772866
Xer1-mediated site-specific DNA inversions and excisions in Mycoplasma agalactiaeQ41826892
The thioredoxin reductase system of mycoplasmasQ42659234
Identification and characterization of a site-specific tyrosine recombinase within the variable loci of Mycoplasma bovis, Mycoplasma pulmonis and Mycoplasma agalactiaeQ42680413
Sequence and analysis of the 60 kb conjugative, bacteriocin-producing plasmid pMRC01 from Lactococcus lactis DPC3147.Q42683961
A novel determinant (comA) essential for natural transformation competence in Neisseria gonorrhoeae and the effect of a comA defect on pilin variation.Q42694166
Regulation of a restriction and modification system via DNA inversion in Mycoplasma pulmonisQ42694194
Molecular genotyping of human Ureaplasma species based on multiple-banded antigen (MBA) gene sequencesQ43709815
Comparison of 16S rRNA genes within the T960 and parvo biovars of ureaplasmas isolated from humansQ44200264
Phylogenetic Analysis of Genes Coding for 16S rRNA in Mammalian UreaplasmasQ45312683
The phylogeny of Ureaplasma urealyticum based on the mba gene fragmentQ45313116
Regulation of cyclooxygenase-2 expression by phospholipase D in human amnion-derived WISH cellsQ45712943
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysisQ48068201
Alternate phase variation in expression of two major surface membrane proteins (MBA and UU376) of Ureaplasma parvum serovar 3.Q48071100
Comparative genome analysis of Ureaplasma parvum clinical isolatesQ48080875
Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomicsQ48525754
Relationship of Ureaplasma urealyticum biovar 2 to nongonococcal urethritis.Q51721428
Phase variation of the multiple banded protein in Ureaplasma urealyticum and Ureaplasma parvum.Q54764273
P921main subjectUreaplasma urealyticumQ137110
Ureaplasma parvumQ4006425
P304page(s)88
P577publication date2012-05-30
P1433published inBMC MicrobiologyQ15759430
P1476titleComparative genome analysis of 19 Ureaplasma urealyticum and Ureaplasma parvum strains
P478volume12

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cites work (P2860)
Q35713023A ferritin-like protein with antioxidant activity in Ureaplasma urealyticum
Q43245595An Excision-Competent and Exogenous Mosaic Transposon Harbors the tetM Gene in Multiple Mycoplasma hominis Lineages
Q38801975Antibiotic resistance among Ureaplasma spp. isolates: cause for concern?
Q35134449Antimicrobial susceptibility patterns of Ureaplasma species and Mycoplasma hominis in pregnant women
Q93065304Association Analysis on Recurrence of Bacterial Vaginosis Revealed Microbes and Clinical Variables Important for Treatment Outcome
Q34611833Chromosomal transfers in mycoplasmas: when minimal genomes go mobile.
Q33928323Comparison between culture and a multiplex quantitative real-time polymerase chain reaction assay detecting Ureaplasma urealyticum and U. parvum
Q34005071Correlation between Ureaplasma subgroup 2 and genitourinary tract disease outcomes revealed by an expanded multilocus sequence typing (eMLST) scheme.
Q91895830Detection of Ureaplasma spp. serovars in genital tract of infertile males
Q62899112Detection of ureaplasmas and bacterial vaginosis associated bacteria and their association with non-gonococcal urethritis in men.
Q44140361Development of a multilocus sequence typing scheme for Ureaplasma
Q64062650Differential modulation of pulmonary caspases: Is this the key to Ureaplasma-driven chronic inflammation?
Q46872232Epidemiological investigation and antimicrobial susceptibility analysis of ureaplasma species and Mycoplasma hominis in outpatients with genital manifestations.
Q33986314Fetal immune response to chorioamnionitis.
Q49960328First Trimester Vaginal Ureaplasma Biovar Colonization and Preterm Birth: Results of a Prospective Multicenter Study.
Q40445485Foetal Ureaplasma parvum bacteraemia as a function of gestation-dependent complement insufficiency: Evidence from a sheep model of pregnancy.
Q35845515Genetic code evolution reveals the neutral emergence of mutational robustness, and information as an evolutionary constraint
Q35452112Genome Sequence of Ureaplasma diversum Strain ATCC 49782.
Q37546131High-resolution melt PCR analysis for genotyping of Ureaplasma parvum isolates directly from clinical samples
Q35168864In vitro activity of five quinolones and analysis of the quinolone resistance-determining regions of gyrA, gyrB, parC, and parE in Ureaplasma parvum and Ureaplasma urealyticum clinical isolates from perinatal patients in Japan
Q36689967Interaction of the putative tyrosine recombinases RipX (UU145), XerC (UU222), and CodV (UU529) of Ureaplasma parvum serovar 3 with specific DNA.
Q28834134MIB-MIP is a mycoplasma system that captures and cleaves immunoglobulin G
Q36799543Modulation of lipopolysaccharide-induced chorioamnionitis by Ureaplasma parvum in sheep
Q33875155Molecular characterization of ureaplasmas isolated from reproductive tract of goats and sheep from Brazil
Q38314395Neonatal CNS infection and inflammation caused by Ureaplasma species: rare or relevant?
Q64084338Perinatal Exposure Is Associated With Increased Risk of Late Onset Sepsis and Imbalanced Inflammation in Preterm Infants and May Add to Lung Injury
Q35668406Random insertion and gene disruption via transposon mutagenesis of Ureaplasma parvum using a mini-transposon plasmid
Q28085587Role of Ureaplasma Respiratory Tract Colonization in Bronchopulmonary Dysplasia Pathogenesis: Current Concepts and Update
Q89450363Spread of multidrug resistance among Ureaplasma serovars, Tunisia
Q38851944Suppression of antimicrobial peptide expression by ureaplasma species
Q28067452The Human Ureaplasma Species as Causative Agents of Chorioamnionitis
Q34662398The Maternal Serological Response to Intrauterine Ureaplasma sp. Infection and Prediction of Risk of Pre-Term Birth
Q57459967Type II restriction modification system in Ureaplasma parvum OMC-P162 strain
Q46242470Ureaplasma Species Differentially Modulate Pro- and Anti-Inflammatory Cytokine Responses in Newborn and Adult Human Monocytes Pushing the State Toward Pro-Inflammation
Q36772953Ureaplasma and BPD
Q36125209Ureaplasma diversum Genome Provides New Insights about the Interaction of the Surface Molecules of This Bacterium with the Host
Q42236874Ureaplasma parvum undergoes selection in utero resulting in genetically diverse isolates colonizing the chorioamnion of fetal sheep
Q34550293Ureaplasma species: role in neonatal morbidities and outcomes
Q42814527Ureaplasma urealyticum or Ureaplasma parvum: what's the difference?
Q46305759Ureaplasma-associated prenatal, perinatal, and neonatal morbidities
Q37835808Urethral inflammatory response to ureaplasma is significantly lower than to Mycoplasma genitalium and Chlamydia trachomatis